This shows you the differences between two versions of the page.
Both sides previous revision Previous revision | Next revision Both sides next revision | ||
archive:computer_resources:assemblies [2010/04/20 04:29] karplus added slug/newbler-assembly1/ |
archive:computer_resources:assemblies [2010/04/20 15:49] karplus added statistics about bases, reads, and contigs; added genome size estimate |
||
---|---|---|---|
Line 9: | Line 9: | ||
===== slug/ ===== | ===== slug/ ===== | ||
- | * newbler-assembly1/ first attempt at de novo assembly using Newbler, using all the reads from 454_run1 and 454_run2. | + | * newbler-assembly1/ first attempt at de novo assembly using Newbler, using all the reads from 454_run1 and 454_run2. This assembly of 499,873 reads including 138,351,643 bases produced only 2,910,773 bases assembled into 8,963 contigs. From this low assembly number, I estimate the coverage to be about 0.043x and the genome size to be about 3.2E9 basepairs. (See the README file for the calculation.) |