archive:computer_resources:assemblies
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archive:computer_resources:assemblies [2010/04/20 04:28] karplus added newbler-assembly2/ |
archive:computer_resources:assemblies [2010/04/20 15:49] karplus added statistics about bases, reads, and contigs; added genome size estimate |
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| + | * newbler-assembly1/ first attempt at de novo assembly using Newbler, using all the reads from 454_run1 and 454_run2. This assembly of 499,873 reads including 138,351,643 bases produced only 2,910,773 bases assembled into 8,963 contigs. From this low assembly number, I estimate the coverage to be about 0.043x and the genome size to be about 3.2E9 basepairs. (See the README file for the calculation.) | ||
archive/computer_resources/assemblies.txt ยท Last modified: 2015/09/02 16:53 by 92.247.181.31
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