archive:bioinformatic_tools
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archive:bioinformatic_tools [2015/07/28 15:12] 149.155.218.110 ↷ Links adapted because of a move operation |
archive:bioinformatic_tools [2015/09/04 14:24] (current) 68.180.228.52 ↷ Links adapted because of a move operation |
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| * [[archive:bioinformatic_tools:pluck-scripts|pluck-scripts]] Python scripts written by Kevin Karplus. | * [[archive:bioinformatic_tools:pluck-scripts|pluck-scripts]] Python scripts written by Kevin Karplus. | ||
| * [[computer_resources:rdb|rdb]] Perl scripts for handling tab-separated columns as if they were a relational database. | * [[computer_resources:rdb|rdb]] Perl scripts for handling tab-separated columns as if they were a relational database. | ||
| - | * [[computer_resources:sff_extract|sff_extract]] Python script to extra sff files into standard component files (.fasta, .fasta.qual, .xml) (Overlaps in functionality with the Roche-provided sffinfo tool, which may do a better job of decoding flow-space to base space.) | + | * [[archive:computer_resources:sff_extract|sff_extract]] Python script to extra sff files into standard component files (.fasta, .fasta.qual, .xml) (Overlaps in functionality with the Roche-provided sffinfo tool, which may do a better job of decoding flow-space to base space.) |
| - | * [[computer_resources:illuminaToFastq|illuminaToFastq]] C program to convert the illumina .txt files into fastq format, discarding pairs of reads that do not both pass illumina's quality filter. | + | * [[archive:computer_resources:illuminatofastq|illuminaToFastq]] C program to convert the illumina .txt files into fastq format, discarding pairs of reads that do not both pass illumina's quality filter. |
| * [[archive:bioinformatic_tools:samtools|SAM Tools]] A utility for manipulating alignments in SAM format. | * [[archive:bioinformatic_tools:samtools|SAM Tools]] A utility for manipulating alignments in SAM format. | ||
archive/bioinformatic_tools.1438096349.txt.gz · Last modified: 2015/07/28 15:12 by 149.155.218.110
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