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--- archive:bioinformatic_tools:tigr [2010/04/13 19:47]
svasili
+++ archive:bioinformatic_tools:tigr [2015/07/28 06:27] (current)
ceisenhart ↷ Page moved from bioinformatic_tools:tigr to archive:bioinformatic_tools:tigr
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 ====== TIGR ======
 The Institute for Genomic Research founded in 1992 by Craig Venter in Rockville, Maryland, United States.\\
-TIGR is now a part of J. Craig Venter Institute JCVI[[http://example.com|External Link]]
+TIGR is now a part of J. Craig Venter Institute [[http://www.jcvi.org/cms/research/software/| JCVI]].
 ====== Overview ======
-TIGR is a classic assembly tool to build consensus sequence from short sequence fragments. TIGR assembler is comparable to Phrap and other greedy algorithm assemblers.
+TIGR is a sequence assembly tool to build consensus sequence from short sequence fragments.
-TIGR literature [[http://www.jcvi.org/cms/uploads/media/TIGR-assembler.pdf | link]].
+TIGR literature can be found [[http://www.jcvi.org/cms/uploads/media/TIGR-assembler.pdf | here]].
+===== Installation =====
+TIGR_Assembler_v2 has been installed in "/campusdata/BME235/programs/TIGR/" from [[ftp://ftp.jcvi.org/pub/software/assembler/| the link]].
+==== Instructions ====
+Under /campusdata/BME235/programs/TIGR/
+  * tar -xvzf TIGR_Assembler_v2.tar.gz
+  * cd TIGR_Assembler_v2
+  * cd src/
+  * make
+  * "/campusdata/BME235/programs/TIGR/TIGR_Assembler_v2/README" has the instructions to run the software on the data.

Banana Slug Genomics