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archive:bioinformatic_tools:tigr [2010/04/13 19:47]
svasili
archive:bioinformatic_tools:tigr [2015/07/28 06:27]
ceisenhart ↷ Page moved from bioinformatic_tools:tigr to archive:bioinformatic_tools:tigr
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 ====== TIGR ====== ====== TIGR ======
 The Institute for Genomic Research founded in 1992 by Craig Venter in Rockville, Maryland, United States.\\ The Institute for Genomic Research founded in 1992 by Craig Venter in Rockville, Maryland, United States.\\
-TIGR is now a part of J. Craig Venter Institute ​JCVI[[http://example.com|External Link]]+TIGR is now a part of J. Craig Venter Institute [[http://www.jcvi.org/​cms/​research/​software/​JCVI]].
  
 ====== Overview ====== ====== Overview ======
  
-TIGR is a classic ​assembly tool to build consensus sequence from short sequence fragments. TIGR assembler is comparable to Phrap and other greedy algorithm assemblers.+TIGR is a sequence ​assembly tool to build consensus sequence from short sequence fragments.
  
-TIGR literature [[http://​www.jcvi.org/​cms/​uploads/​media/​TIGR-assembler.pdf | link]].+TIGR literature ​can be found [[http://​www.jcvi.org/​cms/​uploads/​media/​TIGR-assembler.pdf | here]].
  
 +===== Installation =====
 +TIGR_Assembler_v2 has been installed in "/​campusdata/​BME235/​programs/​TIGR/"​ from [[ftp://​ftp.jcvi.org/​pub/​software/​assembler/​| the link]].
 +
 +==== Instructions ====
 +Under /​campusdata/​BME235/​programs/​TIGR/​
 +
 +  * tar -xvzf TIGR_Assembler_v2.tar.gz ​
 +  * cd TIGR_Assembler_v2 ​
 +  * cd src/ 
 +  * make
 +  * "/​campusdata/​BME235/​programs/​TIGR/​TIGR_Assembler_v2/​README"​ has the instructions to run the software on the data.
  
archive/bioinformatic_tools/tigr.txt · Last modified: 2015/07/28 06:27 by ceisenhart