Banana Slug Genomics

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====== SHARCGS ======

===== Overview =====
SHARCGS[(cite:SHARCGS>Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, and Heinz Himmelbauer. SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. //Genome Res.// November 2007 17: 1697-1706; Published in Advance October 1, 2007, doi:[[http://dx.doi.org/10.1101/gr.6435207|10.1101/gr.6435207]].)] stands for **SH**ort read **A**ssembler based on **R**obust **C**ontig extension for **G**enome **S**equencing.

SHARCGS is a //de novo// DNA assembly program that uses 25-40mers and deep sequence coverage to assemble genomes.
It was used for //de novo// sequencing from Solexa sequencing data of //Helicobacter acinonychis//[(cite:SHARCGSHaci>Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, and Heinz Himmelbauer. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. //Nucleic Acids Research// Advance Access published on July 26, 2008, doi:[[http://dx.doi.org/10.1093/nar/gkn425|10.1093/nar/gkn425]])].

==== Website ====
[[http://sharcgs.molgen.mpg.de/]]

==== Source and Documentation ====
[[http://sharcgs.molgen.mpg.de/download.shtml]]



===== References =====
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~~REFNOTES cite~~

Banana Slug Genomics

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