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--- archive:bioinformatic_tools:sharcgs [2010/04/09 12:10]
cbrumbau
+++ archive:bioinformatic_tools:sharcgs [2010/04/09 15:03]
karplus Removed "Publications" heading and changed listing to a proper citation
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 SHARCGS is a //de novo// DNA assembly program that uses 25-40mers and deep sequence coverage to assemble genomes.
+It was used for //de novo// sequencing from Solexa sequencing data of //Helicobacter acinonychis//[(cite:SHARCGSHaci>Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, and Heinz Himmelbauer. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. //Nucleic Acids Research// Advance Access published on July 26, 2008, doi:[[http://dx.doi.org/10.1093/nar/gkn425|10.1093/nar/gkn425]])].
 ==== Website ====
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 [[http://sharcgs.molgen.mpg.de/download.shtml]]
-===== Publications =====
-SHARCGS deployed in a following paper when used for //de novo// sequencing from Solexa sequencing data of //Helicobacter acinonychis//:
-Juliane C. Dohm , Claudio Lottaz , Tatiana Borodina , and Heinz Himmelbauer. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. //Nucleic Acids Research// Advance Access published on July 26, 2008, doi:[[http://dx.doi.org/10.1093/nar/gkn425|10.1093/nar/gkn425]].
 ===== References =====
 <refnotes>notes-separator: none</refnotes>
 ~~REFNOTES cite~~

Banana Slug Genomics