archive:bioinformatic_tools:sharcgs
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archive:bioinformatic_tools:sharcgs [2010/04/09 12:08] cbrumbau created |
archive:bioinformatic_tools:sharcgs [2015/07/28 06:26] ceisenhart ↷ Page moved from bioinformatic_tools:sharcgs to archive:bioinformatic_tools:sharcgs |
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| ===== Overview ===== | ===== Overview ===== | ||
| - | SHARCGS[(cite:SHARCGS>Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, and Heinz Himmelbauer. SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. //Genome Res.// November 2007 17: 1697-1706; Published in Advance October 1, 2007, [[http://dx.doi.org/10.1101/gr.6435207|doi:10.1101/gr.6435207]].)] stands for **SH**ort read **A**ssembler based on **R**obust **C**ontig extension for **G**enome **S**equencing. | + | SHARCGS[(cite:SHARCGS>Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, and Heinz Himmelbauer. SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. //Genome Res.// November 2007 17: 1697-1706; Published in Advance October 1, 2007, doi:[[http://dx.doi.org/10.1101/gr.6435207|10.1101/gr.6435207]].)] stands for **SH**ort read **A**ssembler based on **R**obust **C**ontig extension for **G**enome **S**equencing. |
| SHARCGS is a //de novo// DNA assembly program that uses 25-40mers and deep sequence coverage to assemble genomes. | SHARCGS is a //de novo// DNA assembly program that uses 25-40mers and deep sequence coverage to assemble genomes. | ||
| + | It was used for //de novo// sequencing from Solexa sequencing data of //Helicobacter acinonychis//[(cite:SHARCGSHaci>Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, and Heinz Himmelbauer. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. //Nucleic Acids Research// Advance Access published on July 26, 2008, doi:[[http://dx.doi.org/10.1093/nar/gkn425|10.1093/nar/gkn425]])]. | ||
| ==== Website ==== | ==== Website ==== | ||
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| [[http://sharcgs.molgen.mpg.de/download.shtml]] | [[http://sharcgs.molgen.mpg.de/download.shtml]] | ||
| - | ===== Publications ===== | ||
| - | SHARCGS deployed in a following paper when used for //de novo// sequencing from Solexa sequencing data of //Helicobacter acinonychis//: | ||
| - | Juliane C. Dohm , Claudio Lottaz , Tatiana Borodina , and Heinz Himmelbauer. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. //Nucleic Acids Research// Advance Access published on July 26, 2008, [[http://dx.doi.org/10.1093/nar/gkn425|DOI 10.1093/nar/gkn425]]. | ||
| ===== References ===== | ===== References ===== | ||
| <refnotes>notes-separator: none</refnotes> | <refnotes>notes-separator: none</refnotes> | ||
| ~~REFNOTES cite~~ | ~~REFNOTES cite~~ | ||
archive/bioinformatic_tools/sharcgs.txt · Last modified: 2015/07/28 06:26 by ceisenhart
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