This shows you the differences between two versions of the page.
Next revision | Previous revision Next revision Both sides next revision | ||
archive:bioinformatic_tools:sharcgs [2010/04/09 12:08] cbrumbau created |
archive:bioinformatic_tools:sharcgs [2010/04/09 12:11] cbrumbau Fix formatting of paper reference |
||
---|---|---|---|
Line 2: | Line 2: | ||
===== Overview ===== | ===== Overview ===== | ||
- | SHARCGS[(cite:SHARCGS>Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, and Heinz Himmelbauer. SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. //Genome Res.// November 2007 17: 1697-1706; Published in Advance October 1, 2007, [[http://dx.doi.org/10.1101/gr.6435207|doi:10.1101/gr.6435207]].)] stands for **SH**ort read **A**ssembler based on **R**obust **C**ontig extension for **G**enome **S**equencing. | + | SHARCGS[(cite:SHARCGS>Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, and Heinz Himmelbauer. SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. //Genome Res.// November 2007 17: 1697-1706; Published in Advance October 1, 2007, doi:[[http://dx.doi.org/10.1101/gr.6435207|10.1101/gr.6435207]].)] stands for **SH**ort read **A**ssembler based on **R**obust **C**ontig extension for **G**enome **S**equencing. |
SHARCGS is a //de novo// DNA assembly program that uses 25-40mers and deep sequence coverage to assemble genomes. | SHARCGS is a //de novo// DNA assembly program that uses 25-40mers and deep sequence coverage to assemble genomes. | ||
Line 15: | Line 15: | ||
SHARCGS deployed in a following paper when used for //de novo// sequencing from Solexa sequencing data of //Helicobacter acinonychis//: | SHARCGS deployed in a following paper when used for //de novo// sequencing from Solexa sequencing data of //Helicobacter acinonychis//: | ||
- | Juliane C. Dohm , Claudio Lottaz , Tatiana Borodina , and Heinz Himmelbauer. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. //Nucleic Acids Research// Advance Access published on July 26, 2008, [[http://dx.doi.org/10.1093/nar/gkn425|DOI 10.1093/nar/gkn425]]. | + | Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, and Heinz Himmelbauer. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. //Nucleic Acids Research// Advance Access published on July 26, 2008, doi:[[http://dx.doi.org/10.1093/nar/gkn425|10.1093/nar/gkn425]]. |
===== References ===== | ===== References ===== | ||
<refnotes>notes-separator: none</refnotes> | <refnotes>notes-separator: none</refnotes> | ||
~~REFNOTES cite~~ | ~~REFNOTES cite~~ |