archive:bioinformatic_tools:sga
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archive:bioinformatic_tools:sga [2011/06/08 22:42] karplus info about installing |
archive:bioinformatic_tools:sga [2015/07/28 06:26] (current) ceisenhart ↷ Page moved from bioinformatic_tools:sga to archive:bioinformatic_tools:sga |
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| * google-sparsehash (also needed for Abyss) | * google-sparsehash (also needed for Abyss) | ||
| * hoard | * hoard | ||
| - | * bamtools, which in turn needs | + | * bamtools, which is a particular pain to install because it uses |
| - | * cmake (newer than the version installed on campusrocks) | + | * cmake (newer than the version installed on campusrocks), and cmake does not support installing stuff anywhere other than in the initial directory or root-access-only directories, so we can't do the usual "configure --prefix=/campusdata/BME235" |
| + | Once cmake, bamtools, hoard, and google/sparsehash are all installed as best they can be, then the UCSC-install.bash script can be run to install SGA. Actually running SGA is still to be tested! | ||
archive/bioinformatic_tools/sga.1307572945.txt.gz · Last modified: 2011/06/08 22:42 by karplus
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