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=====Ray Assembler===== wget from ray site compiled normally See the [[http://denovoassembler.sourceforge.net/|ray wiki]] for further documentation and usage examples. ====Pog Assembly==== ===Assembly 1=== ===Assembly 2=== ====Slug Assembly==== ===Assembly 1=== On kolossus: <code> mpirun -np 25 -x LD_LIBRARY_PATH=/scratch/jstjohn/lib -machinefile machinefile /scratch/jstjohn/Ray-0.0.7/Ray -p /scratch/galt/bananaSlug/slug_1.fastq /scratch/galt/bananaSlug/slug_2.fastq -s /scratch/galt/bananaSlug/GCLL8Y406.fastq -s /scratch/galt/bananaSlug/GAZ7HUX02.fastq -s /scratch/galt/bananaSlug/GAZ7HUX03.fastq -s /scratch/galt/bananaSlug/GAZ7HUX04.fastq -a SLUG.amos -o slugRay1.fa ************************************************** This program comes with ABSOLUTELY NO WARRANTY. This is free software, and you are welcome to redistribute it under certain conditions; see "gpl-3.0.txt" for details. ************************************************** Ray Copyright (C) 2010 Sébastien Boisvert, Jacques Corbeil, François Laviolette http://denovoassembler.sf.net/ AssemblyEngine: Ray 0.0.7 NumberOfRanks: 25 MPILibrary: Open-MPI 1.4.1 OperatingSystem: Linux LoadPairedEndReads Left sequences: /scratch/galt/bananaSlug/slug_1.fastq Right sequences: /scratch/galt/bananaSlug/slug_2.fastq Average length: auto Standard deviation: auto LoadSingleEndReads Sequences: /scratch/galt/bananaSlug/GCLL8Y406.fastq LoadSingleEndReads Sequences: /scratch/galt/bananaSlug/GAZ7HUX02.fastq LoadSingleEndReads Sequences: /scratch/galt/bananaSlug/GAZ7HUX03.fastq LoadSingleEndReads Sequences: /scratch/galt/bananaSlug/GAZ7HUX04.fastq Preparing AMOS file SLUG.amos Loading /scratch/galt/bananaSlug/slug_1.fastq </code>
