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--- archive:bioinformatic_tools:qsra [2010/04/09 12:41]
cbrumbau created
+++ archive:bioinformatic_tools:qsra [2015/07/28 06:27] (current)
ceisenhart ↷ Page moved from bioinformatic_tools:qsra to archive:bioinformatic_tools:qsra
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 ===== Overview =====
-QSRA[(cite:QSRA>Douglas W Bryant Jr, Weng-Keen Wong, and Todd C Mockler. QSRA – a quality-value guided //de novo// short read assembler. //BMC Bioinformatics// 2009, 10:69, doi:[[http://dx.doi.org/10.1186/1471-2105-10-69|10.1186/1471-2105-10-69]].)] stands for **Q**uality Value Guided **S**hort **R**ead **A**ssembler.
+QSRA[(cite:qrsa>Douglas W Bryant Jr, Weng-Keen Wong, and Todd C Mockler. QSRA – a quality-value guided //de novo// short read assembler. //BMC Bioinformatics// 2009, 10:69, doi:[[http://dx.doi.org/10.1186/1471-2105-10-69|10.1186/1471-2105-10-69]].)] stands for **Q**uality Value Guided **S**hort **R**ead **A**ssembler.
-QSRA, as the name implies, is a quality value guided //de novo// short read DNA assembler. It builds upon the VCAKE algorithm and assembles faster than VCAKE.
+QSRA, as the name implies, is a quality value guided //de novo// short read DNA assembler. It builds upon the VCAKE algorithm and assembles faster than VCAKE.[(cite:qrsa)]
+==== Installing ====
+Get the source files and compile QSRA:
+<code>
+cd /campusdata/BME235/programs
+wget http://qsra.cgrb.oregonstate.edu/files/QSRA.tar.gz
+tar xfz QSRA.tar.gz
+mv QSRA.tar.gz QSRA/
+cd QSRA
+make
+</code>
+Copy the compiled binary to the /campusdata/BME235/bin directory:
+<code>
+cp qsra /campusdata/BME235/bin/
+</code>
 ==== Website ====

Banana Slug Genomics

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