archive:bioinformatic_tools:price
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archive:bioinformatic_tools:price [2011/04/13 07:01] eyliaw created |
archive:bioinformatic_tools:price [2015/07/28 06:25] (current) ceisenhart ↷ Page moved from bioinformatic_tools:price to archive:bioinformatic_tools:price |
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| ====== PRICE: Paired-Read Iterative Contig Extension ======= | ====== PRICE: Paired-Read Iterative Contig Extension ======= | ||
| - | PRICE is a sequence assembler that was built for iteratively extending small contigs or reads. It features scalable stringency: one advantage of this is that it can more flexible when coverage is low and more stringent when coverage is high. It primarily works by matching paired-end reads to either end of the initial contig or read--matching strand sense--then converging overlaps to extend the contig. | + | PRICE((http://derisilab.ucsf.edu/software/price/index.html/)) is a sequence assembler that was built for iteratively extending small contigs or reads. It features scalable stringency: one advantage of this is that it can more flexible when coverage is low and more stringent when coverage is high. It primarily works by matching paired-end reads to either end of the initial contig or read--matching strand sense--then converging overlaps to extend the contig. |
| ===== Pipeline ===== | ===== Pipeline ===== | ||
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| ===== Considerations when running PRICE ===== | ===== Considerations when running PRICE ===== | ||
| + | PRICE does not perform quality analysis of reads and evaluates all reads equally. Processing of the data should precede assembly using PRICE. | ||
archive/bioinformatic_tools/price.1302678096.txt.gz · Last modified: 2011/04/13 07:01 by eyliaw
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