archive:bioinformatic_tools:pluck-scripts
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archive:bioinformatic_tools:pluck-scripts [2011/07/08 18:54] karplus [Scripts] added point to look-for-exit |
archive:bioinformatic_tools:pluck-scripts [2015/07/28 06:25] (current) ceisenhart ↷ Page moved from bioinformatic_tools:pluck-scripts to archive:bioinformatic_tools:pluck-scripts |
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| * find-frequent-color-kmers FIXME | * find-frequent-color-kmers FIXME | ||
| * kstitcher David Bernick originally created a program called "stitcher" which would stitch together newbler contigs. Stitcher format: "@name {+contigname|-contigname}+ 15*N" start a new contig called "name comment". This format allows for nested parantheses. No operator precedence; i.e., 15*(-contig1) and 15*-contig1 have very different results. The numeric value does not need to be a scalar. 0.5*contig will report the first half of the contig. Use parantheses whenever possible. Contig names should not be made soley of bases (i.e. GATACA). Strange operator "expr1 < expr2 > expr3" is analagous to "expr1 =~ /expr2/expr3/" iff expr2 is unique. If expr2 is not unique, the replacement will not take place. | * kstitcher David Bernick originally created a program called "stitcher" which would stitch together newbler contigs. Stitcher format: "@name {+contigname|-contigname}+ 15*N" start a new contig called "name comment". This format allows for nested parantheses. No operator precedence; i.e., 15*(-contig1) and 15*-contig1 have very different results. The numeric value does not need to be a scalar. 0.5*contig will report the first half of the contig. Use parantheses whenever possible. Contig names should not be made soley of bases (i.e. GATACA). Strange operator "expr1 < expr2 > expr3" is analagous to "expr1 =~ /expr2/expr3/" iff expr2 is unique. If expr2 is not unique, the replacement will not take place. | ||
| - | * [[bioinformatic_tools:pluck-scripts:look-for-exit|look-for-exit]] used in the mitochondrial genome to find variants of the repeats and exits from the repeats. | + | * [[archive:bioinformatic_tools:pluck-scripts:look-for-exit|look-for-exit]] used in the mitochondrial genome to find variants of the repeats and exits from the repeats. |
| * make-contig-lengths FIXME | * make-contig-lengths FIXME | ||
| * make-inversion-hypotheses FIXME | * make-inversion-hypotheses FIXME | ||
archive/bioinformatic_tools/pluck-scripts.1310151261.txt.gz · Last modified: 2011/07/08 18:54 by karplus
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