Banana Slug Genomics

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====== Phrap ====== ====== Overview ====== PHRAP : "Phragment Assembly Program". Assembles shotgun DNA sequence data, developed by Phil Green [[http://www.phrap.org/phredphrapconsed.html | link to homepage]]. ===== Key Features ===== * Allows use of entire read. * Combines user input data with internally computed data quality to improve accracy of sequence assembly. * "Quality value Q = -10 log10( Pe ); where Q and Pe are respectively the quality value and error probability of a particular base call." PHRAP documentation available [[http://www.phrap.org/phredphrap/phrap.html | here]]. Requires Consed or phrapview editors. NOTE : A request is sent to Phil Green to get the source code for swat/cross_match/phrap package via e-mail. I am waiting for the e-mail.