archive:bioinformatic_tools:phrap
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This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
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archive:bioinformatic_tools:phrap [2010/04/21 23:55] svasili |
archive:bioinformatic_tools:phrap [2015/07/28 06:24] ceisenhart ↷ Page moved from bioinformatic_tools:phrap to archive:bioinformatic_tools:phrap |
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| Requires Consed or phrapview editors. | Requires Consed or phrapview editors. | ||
| + | |||
| + | ===== Academic User Agreement ===== | ||
| + | Please have a look at [[http://www.phrap.org/consed/academic_agreement.txt|academic user agreement]]. | ||
| ===== Installation instructions ===== | ===== Installation instructions ===== | ||
| Line 24: | Line 27: | ||
| <code> | <code> | ||
| - | If you have datasets with more than 64,000 reads, or that include | + | * If you have datasets with more than 64,000 reads, or that include |
| sequences longer than 64,000 bp, you will need the .manyreads and/or | sequences longer than 64,000 bp, you will need the .manyreads and/or | ||
| .longreads versions of phrap and cross_match. These are created using the | .longreads versions of phrap and cross_match. These are created using the | ||
| Line 31: | Line 34: | ||
| > make manyreads | > make manyreads | ||
| - | If you are operating a non-commercial (academic or government) | + | * If you are operating a non-commercial (academic or government) |
| computer facility which provides access to several independent | computer facility which provides access to several independent | ||
| investigators, you are required by the licensing agreement to set the | investigators, you are required by the licensing agreement to set the | ||
| Line 37: | Line 40: | ||
| not read access, so that the programs may not be copied. | not read access, so that the programs may not be copied. | ||
| - | The documentation is in three .doc files: general.doc, phrap.doc, | + | * The documentation is in three .doc files: general.doc, phrap.doc, |
| and swat.doc. Please read it! | and swat.doc. Please read it! | ||
| </code> | </code> | ||
| - | **NOTE** - Currently, the permissions set are : user and group has rwx and r-x permissions respectively, for the executable files and source code files. | + | **NOTE** - Currently, the permissions set are : user and group has r-x permissions, and others have --x permissions for the executable files and source code files. |
archive/bioinformatic_tools/phrap.txt · Last modified: 2015/07/28 06:24 by ceisenhart
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