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archive:bioinformatic_tools:phrap [2010/04/21 23:55] svasili |
archive:bioinformatic_tools:phrap [2010/04/22 00:02] svasili |
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<code> | <code> | ||
- | If you have datasets with more than 64,000 reads, or that include | + | * If you have datasets with more than 64,000 reads, or that include |
sequences longer than 64,000 bp, you will need the .manyreads and/or | sequences longer than 64,000 bp, you will need the .manyreads and/or | ||
.longreads versions of phrap and cross_match. These are created using the | .longreads versions of phrap and cross_match. These are created using the | ||
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> make manyreads | > make manyreads | ||
- | If you are operating a non-commercial (academic or government) | + | * If you are operating a non-commercial (academic or government) |
computer facility which provides access to several independent | computer facility which provides access to several independent | ||
investigators, you are required by the licensing agreement to set the | investigators, you are required by the licensing agreement to set the | ||
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not read access, so that the programs may not be copied. | not read access, so that the programs may not be copied. | ||
- | The documentation is in three .doc files: general.doc, phrap.doc, | + | * The documentation is in three .doc files: general.doc, phrap.doc, |
and swat.doc. Please read it! | and swat.doc. Please read it! | ||
</code> | </code> | ||
- | **NOTE** - Currently, the permissions set are : user and group has rwx and r-x permissions respectively, for the executable files and source code files. | + | **NOTE** - Currently, the permissions set are : user and group has r-x permissions, and others have --x permissions for the executable files and source code files. |