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archive:bioinformatic_tools:phrap [2010/04/09 19:55]
svasili
archive:bioinformatic_tools:phrap [2010/04/23 02:21]
svasili
Line 11: Line 11:
  
 Requires Consed or phrapview editors. Requires Consed or phrapview editors.
 +
 +===== Academic User Agreement =====
 +Please have a look at [[http://​www.phrap.org/​consed/​academic_agreement.txt|academic user agreement]].
 +
 +===== Installation instructions =====
 +Phrap is now installed under /​campusdata/​BME235/​programs/​phrap following instructions received from Phil Green.
 +
 +Steps followed for installation :
 +<​code>​
 +zcat distrib.tar.Z | tar xvf -
 +make
 +</​code>​
 +
 +===== Other important instructions from Phil Green =====
 +
 +<​code>​
 +  * If you have datasets with more than 64,000 reads, or that include
 +sequences longer than 64,000 bp, you will need the .manyreads and/or
 +.longreads versions of phrap and cross_match. These are created using the
 +command
 +
 +> make manyreads
 +
 +  * If you are operating a non-commercial (academic or government)
 +computer facility which provides access to several independent
 +investigators,​ you are required by the licensing agreement to set the
 +permissions on the executables and source code to allow execute but
 +not read access, so that the programs may not be copied.
 +
 +  * The documentation is in three .doc files: general.doc,​ phrap.doc,
 +and swat.doc. Please read it!
 +
 +</​code>​
 +
 +**NOTE** - Currently, the permissions set are : user and group has r-x permissions,​ and others have --x permissions for the executable files and source code files.
 +
archive/bioinformatic_tools/phrap.txt · Last modified: 2015/07/28 06:24 by ceisenhart