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[[http://sourceforge.net/apps/mediawiki/mira-assembler/index.php?title=Main_Page||External Page]] - Contains Description and download links. MIRA works with Sanger, 454 and Illumina data. It is 12 years in the making and still being actively developed. ====Installation==== To install we first needed to download and install [[http://flex.sourceforge.net/|GNU Flex]] 2.5.35 and [[http://sourceforge.net/projects/expat/|Expat]] 2.0.1 libraries. Both were downloaded from sourceforge.net and installed with ./configure --prefix=/campusdata/BME235/ make make install Once the prerequisites were installed, installation was successful with with ./configure --prefix=/campusdata/BME235 --with-boost=/campusdata/BME235 --with-boost-libdir=/campusdata/BME235/lib --with-expat=/campusdata/BME235 make make install This added the following binaries to the [[computer_resources:bin|bin]] directory <code>-rwxr-xr-x+ 1 mcusack bme235 3.0M Apr 11 21:18 convert_project -rwxr-xr-x+ 1 mcusack bme235 11K Apr 11 21:18 fasta2frag.tcl -rwxr-xr-x+ 1 mcusack bme235 3.2K Apr 11 21:18 fastaselect.tcl -rwxr-xr-x+ 1 mcusack bme235 86K Apr 11 21:18 fastatool -rwxr-xr-x+ 1 mcusack bme235 1.6K Apr 11 21:18 fixACE4consed.tcl -rwxr-xr-x+ 1 mcusack bme235 3.1M Apr 11 21:18 mira lrwxrwxrwx 1 mcusack bme235 4 Apr 11 21:18 miraclip -> mira lrwxrwxrwx 1 mcusack bme235 4 Apr 11 21:18 miramem -> mira lrwxrwxrwx 1 mcusack bme235 4 Apr 11 21:18 miraSearchESTSNPs -> mira -rwxr-xr-x+ 1 mcusack bme235 568K Apr 11 21:18 scftool </code>
