Banana Slug Genomics

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[[http://sourceforge.net/apps/mediawiki/mira-assembler/index.php?title=Main_Page||External Page]] - Contains Description and download links.

MIRA works with Sanger, 454 and Illumina data. It is 12 years in the making and still being actively developed.

====Installation====
To install we first needed to download and install [[http://flex.sourceforge.net/|GNU Flex]] 2.5.35 and [[http://sourceforge.net/projects/expat/|Expat]] 2.0.1 libraries.
Both were downloaded from sourceforge.net and installed with
  ./configure --prefix=/campusdata/BME235/
  make
  make install
  
Once the prerequisites were installed, installation was successful with with
  ./configure --prefix=/campusdata/BME235 --with-boost=/campusdata/BME235 --with-boost-libdir=/campusdata/BME235/lib --with-expat=/campusdata/BME235 
  make
  make install
  
This added the following binaries to the [[computer_resources:bin|bin]] directory
<code>-rwxr-xr-x+  1 mcusack  bme235  3.0M Apr 11 21:18 convert_project
-rwxr-xr-x+  1 mcusack  bme235   11K Apr 11 21:18 fasta2frag.tcl
-rwxr-xr-x+  1 mcusack  bme235  3.2K Apr 11 21:18 fastaselect.tcl
-rwxr-xr-x+  1 mcusack  bme235   86K Apr 11 21:18 fastatool
-rwxr-xr-x+  1 mcusack  bme235  1.6K Apr 11 21:18 fixACE4consed.tcl
-rwxr-xr-x+  1 mcusack  bme235  3.1M Apr 11 21:18 mira
lrwxrwxrwx   1 mcusack  bme235     4 Apr 11 21:18 miraclip -> mira
lrwxrwxrwx   1 mcusack  bme235     4 Apr 11 21:18 miramem -> mira
lrwxrwxrwx   1 mcusack  bme235     4 Apr 11 21:18 miraSearchESTSNPs -> mira
-rwxr-xr-x+  1 mcusack  bme235  568K Apr 11 21:18 scftool
</code>

Banana Slug Genomics

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