archive:bioinformatic_tools:jellyfish
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archive:bioinformatic_tools:jellyfish [2011/04/24 20:44] eyliaw |
archive:bioinformatic_tools:jellyfish [2011/05/16 20:37] karplus Added numbers from Illumina run 1 counts |
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| {{:bioinformatic_tools:slug-fit-gamma-illumina1.png|}} | {{:bioinformatic_tools:slug-fit-gamma-illumina1.png|}} | ||
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| + | For run1, the first few distinct kmer with the specified multiplicities are | ||
| + | - 970,576,481 (19-mers) 1,242,303,036 (22-mers) | ||
| + | - 95,088,167 (19-mers) 100,246,200 (22-mers) | ||
| + | - 55,353,345 (19-mers) 67,039,962 (22-mers) | ||
| + | - 60,129,122 (19-mers) 77,381,432 (22-mers) | ||
| + | Total distinct: 2,298,220,805 (19-mers) 2,699,479,169 (22-mers) | ||
| + | These counts were done before running SeqPrep, so include adapter reads. | ||
| ====== Gamma distribution is wrong ====== | ====== Gamma distribution is wrong ====== | ||
archive/bioinformatic_tools/jellyfish.txt · Last modified: 2015/07/28 06:23 by ceisenhart
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