Banana Slug Genomics

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.


====== Celera Assembler ======

The Celera Assembler is a De novo whole genome sequence assembler, designed by Celera Genomics. It was created in 1999 and remained proprietary until its release under the GNU license in 2004. With its open-source release came a name change to wgs-assembler. It was also included in the 454 pipeline under the name CABOG in 2008.

Here is a link to the [[http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=Main_Page|Source Forge Page]]

===== Installation instructions =====

Celera assembler is now installed under /campusdata/BME235/programs/Celera following the instructions given at [[http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=Version_5.4_Release_Notes | the Source Forge Release Notes Page]]. 

Following steps were followed to install :
<code>
% bzip2 -dc wgs-6.0-beta.tar.bz2 | tar -xf -
% cd wgs-6.0-beta
% cd kmer
% sh configure.sh
% gmake install
% cd ../src
% gmake
% cd ..

Binary distributions need only be unpacked.

% bzip2 -dc wgs-6.0-beta-Linux-amd64.tar.bz2 | tar -xf -
</code>

Banana Slug Genomics

User Tools

Site Tools

Page Tools