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====== CAP3 PCAP ====== ===== Overview ===== CAP3 assembles EST sequences with optional quality values.\\ Can use quality values. PCAP assembes large genomes sequences.\\ Can use quality values and read pairs. Developed at Iowa State University. The NIH pages seems to have much more information than the Iowa State page.\\ Would we want to look into running our data on NIH clusters? ==== Publications ==== **CAP3: A DNA Sequence Assembly Program** [(cite:CAP3>Huang, X. and Madan, A. (1999)\\ CAP3: A DNA Sequence Assembly Program. Genome Research, 9: 868-877.)]\\ **PCAP: A Whole-Genome Assembly Program** [(cite:PCAP>Huang, X., Wang, J., Aluru, S., Yang, S.-P. and Hillier, L. (2003)\\ PCAP: A Whole-Genome Assembly Program. Genome Research, 13: 2164-2170.)] ==== Website ==== [[http://helix.nih.gov/Applications/cap3.html|Instructions for running on NIH Helix]] ==== Source with Binaries and Documentation ==== [[http://seq.cs.iastate.edu/]] ===== References ===== <refnotes>notes-separator: none</refnotes> ~~REFNOTES cite~~
