**This is an old revision of the document!** ----
[[http://seq.cs.iastate.edu/cap3.html|Download Page]] [[http://helix.nih.gov/Applications/cap3.html|Instructions for running on NIH Helix]] The NIH pages seems to have much more information than the Iowa State page. Would we want to look into running our data on NIH clusters? Publications: Huang, X. and Madan, A. (1999) CAP3: A DNA Sequence Assembly Program. Genome Research, 9: 868-877. Huang, X., Wang, J., Aluru, S., Yang, S.-P. and Hillier, L. (2003) PCAP: A Whole-Genome Assembly Program. Genome Research, 13: 2164-2170.