Banana Slug Genomics

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====== CAP3 PCAP ======

===== Overview =====

[[http://helix.nih.gov/Applications/cap3.html|Instructions for running on NIH Helix]]

The NIH pages seems to have much more information than the Iowa State page.

Would we want to look into running our data on NIH clusters?

==== Publications ====
**CAP3: A DNA Sequence Assembly Program**
[(cite:CAP3>Huang, X. and Madan, A. (1999)\\
  CAP3: A DNA Sequence Assembly Program. Genome Research, 9: 868-877.)]\\
**PCAP: A Whole-Genome Assembly Program**
[(cite:PCAP>Huang, X., Wang, J., Aluru, S., Yang, S.-P. and Hillier, L. (2003)\\
    PCAP: A Whole-Genome Assembly Program. Genome Research, 13: 2164-2170.)]
  
==== Website ====
[[http://seq.cs.iastate.edu/cap3.html]]

==== Source with Binaries and Documentation ====
[[http://TODO]]

===== References =====
<refnotes>notes-separator: none</refnotes>
~~REFNOTES cite~~

Banana Slug Genomics

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