archive:bioinformatic_tools:cap3_pcap
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| Both sides previous revision Previous revision Next revision | Previous revision | ||
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archive:bioinformatic_tools:cap3_pcap [2010/05/11 04:57] galt |
archive:bioinformatic_tools:cap3_pcap [2015/07/28 06:22] (current) ceisenhart ↷ Page moved from bioinformatic_tools:cap3_pcap to archive:bioinformatic_tools:cap3_pcap |
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| so we'll have to read the documentation | so we'll have to read the documentation | ||
| and decide what else to copy into bin/ | and decide what else to copy into bin/ | ||
| + | |||
| + | ==== Running PCAP ==== | ||
| Actually, we wanted to use autopcap, and so far we have | Actually, we wanted to use autopcap, and so far we have | ||
| - | been unable to get it to work unless we run it from a subdirectory | + | been unable to get it to work unless we run it from a sub-directory |
| with all the pcap-related programs in ../ | with all the pcap-related programs in ../ | ||
| - | which mimics the structure of their example data. | + | which mimics the structure of their example data. \\ |
| + | This is due to the hardwired code in autopcap to access the parent directory where pcap code is saved. The parent directory is used as default.\\ | ||
| + | It took little more than 2 hrs to run the assembly on POG 454 data.\\ | ||
| ==== Website ==== | ==== Website ==== | ||
archive/bioinformatic_tools/cap3_pcap.1273553840.txt.gz · Last modified: 2010/05/11 04:57 by galt
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