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--- archive:bioinformatic_tools:cap3_pcap [2010/04/14 10:29]
galt
+++ archive:bioinformatic_tools:cap3_pcap [2015/07/28 06:22]
ceisenhart ↷ Page moved from bioinformatic_tools:cap3_pcap to archive:bioinformatic_tools:cap3_pcap
@@ Line 42: / Line 42: @@
   cp pcap ../../bin/
+The pcap package has several binaries,
+so we'll have to read the documentation
+and decide what else to copy into bin/
+==== Running PCAP ====
+Actually, we wanted to use autopcap, and so far we have
+been unable to get it to work unless we run it from a sub-directory
+with all the pcap-related programs in ../
+which mimics the structure of their example data. \\
+This is due to the hardwired code in autopcap to access the parent directory where pcap code is saved. The parent directory is used as default.\\
+It took little more than 2 hrs to run the assembly on POG 454 data.\\
 ==== Website ====

Banana Slug Genomics