archive:bioinformatic_tools:cap3_pcap
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archive:bioinformatic_tools:cap3_pcap [2010/04/14 10:29] galt |
archive:bioinformatic_tools:cap3_pcap [2010/06/09 19:08] svasili |
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| cp cap3 ../../bin/ | cp cap3 ../../bin/ | ||
| + | ==== INSTALLING PCAP ==== | ||
| + | |||
| + | cd /campusdata/BME235/programs | ||
| + | wget http://seq.cs.iastate.edu/PCAP/pcap.rep.linux.opteron64.tar | ||
| + | tar xf pcap.rep.linux.opteron64.tar | ||
| + | mv pcap.rep.linux.opteron64 pcap | ||
| + | mv pcap.rep.linux.opteron64.tar pcap/ | ||
| + | cd pcap | ||
| + | cp pcap ../../bin/ | ||
| + | |||
| + | The pcap package has several binaries, | ||
| + | so we'll have to read the documentation | ||
| + | and decide what else to copy into bin/ | ||
| + | |||
| + | ==== Running PCAP ==== | ||
| + | |||
| + | Actually, we wanted to use autopcap, and so far we have | ||
| + | been unable to get it to work unless we run it from a sub-directory | ||
| + | with all the pcap-related programs in ../ | ||
| + | which mimics the structure of their example data. \\ | ||
| + | This is due to the hardwired code in autopcap to access the parent directory where pcap code is saved. The parent directory is used as default.\\ | ||
| + | It took little more than 2 hrs to run the assembly on POG 454 data.\\ | ||
| ==== Website ==== | ==== Website ==== | ||
archive/bioinformatic_tools/cap3_pcap.txt · Last modified: 2015/07/28 06:22 by ceisenhart
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