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--- archive:bioinformatic_tools:bwa [2011/05/30 06:21]
karplus [Using BWA] Mentioning gzip capability.
+++ archive:bioinformatic_tools:bwa [2011/05/30 19:30]
svohr
@@ Line 88: / Line 88: @@
 {{:bioinformatic_tools:run2_bc08_seqprep_histogram_r2.png|}}
+===== After Quake =====
+This process was repeat on the data after Quake correction. In addition to the paired reads and merge reads, Quake separates the reads whose pair could not be successfully corrected.
+{{:bioinformatic_tools:run1_quake_histogram.png|}}
+{{:bioinformatic_tools:run2_bc07_quake_histogram.png|}}
+{{:bioinformatic_tools:run2_bc08_quake_histogram.png|}}
+==== Mean Lengths ====
+Run 1
+| Template | 151.7 |
+| Merged   | 113.3 |
+| Single   | 65.7  |
+Run 2 bc07
+| Template | 250.3 |
+| Merged   | 142.5 |
+| Single   |  88.8 |
+Run 2 bc08
+| Template |  94.5 |
+| Merged   | 104.2 |
+| Single   |  61.3 |

Banana Slug Genomics