archive:bioinformatic_tools:allpaths
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| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
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archive:bioinformatic_tools:allpaths [2010/04/19 05:21] jstjohn |
archive:bioinformatic_tools:allpaths [2010/04/19 06:21] jstjohn |
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| To compile with the gcc 4.5 compilers you need to have your environment properly set up so that everything knows where to look for the linked libraries. I did this by setting my LD_LIBRARY_PATH variable as follows in my .profile | To compile with the gcc 4.5 compilers you need to have your environment properly set up so that everything knows where to look for the linked libraries. I did this by setting my LD_LIBRARY_PATH variable as follows in my .profile | ||
| - | LD_LIBRARY_PATH=/campusdata/BME235/lib:/campusdata/BME235/lib64 | + | LD_LIBRARY_PATH=/campusdata/BME235/lib:/campusdata/BME235/lib64:$LD_LIBRARY_PATH |
| export LD_LIBRARY_PATH | export LD_LIBRARY_PATH | ||
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| /campusdata/BME235/programs/allpaths/allpaths3-3.2/installallpaths.sh | /campusdata/BME235/programs/allpaths/allpaths3-3.2/installallpaths.sh | ||
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| + | I have encountered a new error much further along in the compilation. To view the error see the last 40 lines of file: | ||
| + | /campus/BME235/programs/allpaths/allpaths3-3.2/installallpaths.sh.o2730 | ||
| + | |||
| + | /campusdata/BME235/programs/allpaths/allpaths3-3.2/src/paths/MuxWalkGraph.cc:740: undefined reference to `digraphE<KmerPath>::TransferEdges(int, int, unsigned char)' | ||
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| ===== References ===== | ===== References ===== | ||
| <refnotes>notes-separator: none</refnotes> | <refnotes>notes-separator: none</refnotes> | ||
| ~~REFNOTES cite~~ | ~~REFNOTES cite~~ | ||
archive/bioinformatic_tools/allpaths.txt · Last modified: 2015/07/28 06:22 by ceisenhart
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