archive:bioinformatic_tools:allpaths
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
|
archive:bioinformatic_tools:allpaths [2010/04/19 05:21] jstjohn |
archive:bioinformatic_tools:allpaths [2010/04/19 06:21] jstjohn |
||
|---|---|---|---|
| Line 52: | Line 52: | ||
| To compile with the gcc 4.5 compilers you need to have your environment properly set up so that everything knows where to look for the linked libraries. I did this by setting my LD_LIBRARY_PATH variable as follows in my .profile | To compile with the gcc 4.5 compilers you need to have your environment properly set up so that everything knows where to look for the linked libraries. I did this by setting my LD_LIBRARY_PATH variable as follows in my .profile | ||
| - | LD_LIBRARY_PATH=/campusdata/BME235/lib:/campusdata/BME235/lib64 | + | LD_LIBRARY_PATH=/campusdata/BME235/lib:/campusdata/BME235/lib64:$LD_LIBRARY_PATH |
| - | + | export LD_LIBRARY_PATH | |
| - | export LD_LIBRARY_PATH | + | |
| Note if you want to run the install via a script, an example script that sets up environmental variables is here: | Note if you want to run the install via a script, an example script that sets up environmental variables is here: | ||
| Line 60: | Line 59: | ||
| /campusdata/BME235/programs/allpaths/allpaths3-3.2/installallpaths.sh | /campusdata/BME235/programs/allpaths/allpaths3-3.2/installallpaths.sh | ||
| | | ||
| + | |||
| + | I have encountered a new error much further along in the compilation. To view the error see the last 40 lines of file: | ||
| + | /campus/BME235/programs/allpaths/allpaths3-3.2/installallpaths.sh.o2730 | ||
| + | |||
| + | /campusdata/BME235/programs/allpaths/allpaths3-3.2/src/paths/MuxWalkGraph.cc:740: undefined reference to `digraphE<KmerPath>::TransferEdges(int, int, unsigned char)' | ||
| + | |||
| ===== References ===== | ===== References ===== | ||
| <refnotes>notes-separator: none</refnotes> | <refnotes>notes-separator: none</refnotes> | ||
| ~~REFNOTES cite~~ | ~~REFNOTES cite~~ | ||
archive/bioinformatic_tools/allpaths.txt · Last modified: 2015/07/28 06:22 by ceisenhart
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Noncommercial-Share Alike 3.0 Unported
