archive:bioinformatic_tools:allpaths
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archive:bioinformatic_tools:allpaths [2010/04/08 16:20] jstjohn Better version of the allpaths manual where the text is readable and the filesize is simaller. |
archive:bioinformatic_tools:allpaths [2010/04/19 05:14] jstjohn |
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| Reading deeper into the documentation (the PDF attached to this page), I see that it requires gcc-4.3+. Campusrocks currently has gcc-4.1 installed. Perhaps if we compile the latest gcc we can install this program? | Reading deeper into the documentation (the PDF attached to this page), I see that it requires gcc-4.3+. Campusrocks currently has gcc-4.1 installed. Perhaps if we compile the latest gcc we can install this program? | ||
| + | |||
| + | |||
| + | Installed gcc-4.5! (had to do it myself, the sys admins wouldn't try) | ||
| + | |||
| + | Note, if you compile with gcc-4.5 (or any of the other cc/c++-4.5) you will need to do one of the following: | ||
| + | ---------------------------------------------------------------------- | ||
| + | Libraries have been installed in: | ||
| + | /campusdata/BME235/lib/../lib64 | ||
| + | |||
| + | If you ever happen to want to link against installed libraries | ||
| + | in a given directory, LIBDIR, you must either use libtool, and | ||
| + | specify the full pathname of the library, or use the `-LLIBDIR' | ||
| + | flag during linking and do at least one of the following: | ||
| + | - add LIBDIR to the `LD_LIBRARY_PATH' environment variable | ||
| + | during execution | ||
| + | - add LIBDIR to the `LD_RUN_PATH' environment variable | ||
| + | during linking | ||
| + | - use the `-Wl,-rpath -Wl,LIBDIR' linker flag | ||
| + | - have your system administrator add LIBDIR to `/etc/ld.so.conf' | ||
| + | |||
| + | See any operating system documentation about shared libraries for | ||
| + | more information, such as the ld(1) and ld.so(8) manual pages. | ||
| + | ---------------------------------------------------------------------- | ||
| + | |||
| + | |||
| + | While attempting to install Allpaths I get an error right away for all methods other than setting | ||
| + | |||
| + | LD_LIBRARY_PATH=/campusdata/BME235/lib:/campusdata/BME235/lib64 | ||
| ===== References ===== | ===== References ===== | ||
| <refnotes>notes-separator: none</refnotes> | <refnotes>notes-separator: none</refnotes> | ||
| ~~REFNOTES cite~~ | ~~REFNOTES cite~~ | ||
archive/bioinformatic_tools/allpaths.txt · Last modified: 2015/07/28 06:22 by ceisenhart
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