This shows you the differences between two versions of the page.
Both sides previous revision Previous revision | Next revision Both sides next revision | ||
archive:bioinformatic_tools:allpaths [2010/04/06 01:04] jstjohn |
archive:bioinformatic_tools:allpaths [2010/04/06 01:06] jstjohn |
||
---|---|---|---|
Line 1: | Line 1: | ||
===== ALLPATHS ===== | ===== ALLPATHS ===== | ||
====High Level Overview==== | ====High Level Overview==== | ||
- | ALLPATHS is the most recent (as of this writing) tool developed by the broad institute to assemble shotgun sequences[(cite:broad>http://www.broadinstitute.org/science/programs/genome-biology/computational-rd/computational-research-and-development)]. The broad institute claims that version 3 of the program can assemble up to mammalian sized genomes if the reads are at least 100+ base pairs[(cite:broad)]. Version 3 (currently 3.1) of the program may be downloaded from [ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/] and that folder also contains some documentation on how to use the program. Also the program ships with test data that you can assemble. | + | ALLPATHS is the most recent (as of this writing) tool developed by the broad institute to assemble shotgun sequences[(cite:broad>http://www.broadinstitute.org/science/programs/genome-biology/computational-rd/computational-research-and-development)]. The broad institute claims that version 3 of the program can assemble up to mammalian sized genomes if the reads are at least 100+ base pairs[(cite:broad)]. Version 3 (currently 3.1) of the program may be downloaded from [[ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/|here]] and that folder also contains some documentation on how to use the program. Also the program ships with test data that you can assemble. |
===Expected Data Quality=== | ===Expected Data Quality=== |