archive:bioinformatic_tools:allpaths
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archive:bioinformatic_tools:allpaths [2010/04/06 00:26] jstjohn created |
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| + | ===== About ALLPATHS ===== | ||
| + | ====High Level Overview==== | ||
| ALLPATHS is the most recent (as of this writing) tool developed by the broad institute to assemble shotgun sequences[(cite:broad>http://www.broadinstitute.org/science/programs/genome-biology/computational-rd/computational-research-and-development)]. The broad institute claims that version 3 of the program can assemble up to mammalian sized genomes if the reads are at least 100+ base pairs[(cite:broad)]. Version 3 (currently 3.1) of the program may be downloaded from [ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/] and that folder also contains some documentation on how to use the program. Also the program ships with test data that you can assemble. | ALLPATHS is the most recent (as of this writing) tool developed by the broad institute to assemble shotgun sequences[(cite:broad>http://www.broadinstitute.org/science/programs/genome-biology/computational-rd/computational-research-and-development)]. The broad institute claims that version 3 of the program can assemble up to mammalian sized genomes if the reads are at least 100+ base pairs[(cite:broad)]. Version 3 (currently 3.1) of the program may be downloaded from [ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/] and that folder also contains some documentation on how to use the program. Also the program ships with test data that you can assemble. | ||
archive/bioinformatic_tools/allpaths.txt · Last modified: 2015/07/28 06:22 by ceisenhart
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