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archive:bioinformatic_tools:abyss [2010/05/20 20:54] jstjohn |
archive:bioinformatic_tools:abyss [2015/07/28 06:23] (current) ceisenhart ↷ Page moved from bioinformatic_tools:abyss to archive:bioinformatic_tools:abyss |
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</code> | </code> | ||
+ | === Yet Another Install (1.2.7) === | ||
+ | |||
+ | On 7 Jun 2011, Kevin Karplus tried installing abyss-1.2.7 from /campusdata/BME235/programs/abyss-1.2.7/ using | ||
+ | |||
+ | <code> | ||
+ | configure --prefix=/campusdata/BME235 \ | ||
+ | CPPFLAGS='-I/opt/openmpi/include -I/campusdata/BME235/include' \ | ||
+ | LDFLAGS=-L/campusdata/BME235/lib \ | ||
+ | CC=gcc44 CXX=g++44 \ | ||
+ | --with-mpi=/opt/openmpi | ||
+ | </code> | ||
+ | |||
+ | Before this configure could work, sparsehash-1.10 was installed from /campusdata/BME235/programs/google/sparsehash-1.10/ | ||
==== Websites ==== | ==== Websites ==== | ||
[[http://www.bcgsc.ca/platform/bioinfo/software/abyss|ABySS]] \\ | [[http://www.bcgsc.ca/platform/bioinfo/software/abyss|ABySS]] \\ | ||
[[http://www.open-mpi.org|OpenMPI]] \\ | [[http://www.open-mpi.org|OpenMPI]] \\ | ||
- | [[http://code.google.com/p/google-sparsehash|Google sparsehash]] | + | [[http://code.google.com/p/google-sparsehash|Google sparsehash]] \\ |
+ | [[http://www.boost.org/|Boost]] | ||
==== Sources with Binaries and Documentation ==== | ==== Sources with Binaries and Documentation ==== | ||
[[http://www.bcgsc.ca/platform/bioinfo/software/abyss/releases|ABySS]] \\ | [[http://www.bcgsc.ca/platform/bioinfo/software/abyss/releases|ABySS]] \\ | ||
[[http://www.open-mpi.org/software/ompi|OpenMPI]] \\ | [[http://www.open-mpi.org/software/ompi|OpenMPI]] \\ | ||
- | [[http://code.google.com/p/google-sparsehash/downloads/list|Google sparsehash]] | + | [[http://code.google.com/p/google-sparsehash/downloads/list|Google sparsehash]] \\ |
+ | [[http://www.boost.org/users/history/version_1_57_0.html|Boost]] | ||
===== Slug Assembly ===== | ===== Slug Assembly ===== | ||