archive:bioinformatic_tools:abyss
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
|
archive:bioinformatic_tools:abyss [2010/05/20 20:54] jstjohn |
archive:bioinformatic_tools:abyss [2015/07/28 06:23] (current) ceisenhart ↷ Page moved from bioinformatic_tools:abyss to archive:bioinformatic_tools:abyss |
||
|---|---|---|---|
| Line 96: | Line 96: | ||
| </code> | </code> | ||
| + | === Yet Another Install (1.2.7) === | ||
| + | |||
| + | On 7 Jun 2011, Kevin Karplus tried installing abyss-1.2.7 from /campusdata/BME235/programs/abyss-1.2.7/ using | ||
| + | |||
| + | <code> | ||
| + | configure --prefix=/campusdata/BME235 \ | ||
| + | CPPFLAGS='-I/opt/openmpi/include -I/campusdata/BME235/include' \ | ||
| + | LDFLAGS=-L/campusdata/BME235/lib \ | ||
| + | CC=gcc44 CXX=g++44 \ | ||
| + | --with-mpi=/opt/openmpi | ||
| + | </code> | ||
| + | |||
| + | Before this configure could work, sparsehash-1.10 was installed from /campusdata/BME235/programs/google/sparsehash-1.10/ | ||
| ==== Websites ==== | ==== Websites ==== | ||
| [[http://www.bcgsc.ca/platform/bioinfo/software/abyss|ABySS]] \\ | [[http://www.bcgsc.ca/platform/bioinfo/software/abyss|ABySS]] \\ | ||
| [[http://www.open-mpi.org|OpenMPI]] \\ | [[http://www.open-mpi.org|OpenMPI]] \\ | ||
| - | [[http://code.google.com/p/google-sparsehash|Google sparsehash]] | + | [[http://code.google.com/p/google-sparsehash|Google sparsehash]] \\ |
| + | [[http://www.boost.org/|Boost]] | ||
| ==== Sources with Binaries and Documentation ==== | ==== Sources with Binaries and Documentation ==== | ||
| [[http://www.bcgsc.ca/platform/bioinfo/software/abyss/releases|ABySS]] \\ | [[http://www.bcgsc.ca/platform/bioinfo/software/abyss/releases|ABySS]] \\ | ||
| [[http://www.open-mpi.org/software/ompi|OpenMPI]] \\ | [[http://www.open-mpi.org/software/ompi|OpenMPI]] \\ | ||
| - | [[http://code.google.com/p/google-sparsehash/downloads/list|Google sparsehash]] | + | [[http://code.google.com/p/google-sparsehash/downloads/list|Google sparsehash]] \\ |
| + | [[http://www.boost.org/users/history/version_1_57_0.html|Boost]] | ||
| ===== Slug Assembly ===== | ===== Slug Assembly ===== | ||
archive/bioinformatic_tools/abyss.1274388866.txt.gz · Last modified: 2010/05/20 20:54 by jstjohn
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Noncommercial-Share Alike 3.0 Unported
