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--- archive:bioinformatic_tools:abyss [2010/05/20 20:54]
jstjohn
+++ archive:bioinformatic_tools:abyss [2015/04/16 10:31]
jaredc [Sources with Binaries and Documentation]
@@ Line 96: / Line 96: @@
 </code>
+=== Yet Another Install (1.2.7) ===
+On 7 Jun 2011, Kevin Karplus tried installing abyss-1.2.7 from /campusdata/BME235/programs/abyss-1.2.7/ using
+<code>
+configure --prefix=/campusdata/BME235 \
+        CPPFLAGS='-I/opt/openmpi/include -I/campusdata/BME235/include' \
+        LDFLAGS=-L/campusdata/BME235/lib  \
+        CC=gcc44 CXX=g++44 \
+        --with-mpi=/opt/openmpi
+</code>
+Before this configure could work, sparsehash-1.10 was installed from /campusdata/BME235/programs/google/sparsehash-1.10/
 ==== Websites ====
 [[http://www.bcgsc.ca/platform/bioinfo/software/abyss|ABySS]] \\
 [[http://www.open-mpi.org|OpenMPI]] \\
-[[http://code.google.com/p/google-sparsehash|Google sparsehash]]
+[[http://code.google.com/p/google-sparsehash|Google sparsehash]] \\
+[[http://www.boost.org/|Boost]]
 ==== Sources with Binaries and Documentation ====
 [[http://www.bcgsc.ca/platform/bioinfo/software/abyss/releases|ABySS]] \\
 [[http://www.open-mpi.org/software/ompi|OpenMPI]] \\
-[[http://code.google.com/p/google-sparsehash/downloads/list|Google sparsehash]]
+[[http://code.google.com/p/google-sparsehash/downloads/list|Google sparsehash]] \\
+[[http://www.boost.org/users/history/version_1_57_0.html|Boost]]
 ===== Slug Assembly =====

Banana Slug Genomics