archive:bioinformatic_tools:abyss
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archive:bioinformatic_tools:abyss [2010/05/15 20:05] jstjohn |
archive:bioinformatic_tools:abyss [2010/05/15 20:09] jstjohn |
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| I am now submitting an IT request to have someone look into this. | I am now submitting an IT request to have someone look into this. | ||
| - | |||
| ====Attempt 3==== | ====Attempt 3==== | ||
| For this attempt I manually set up an openmpi environment and execute the program in parallel over this environment. | For this attempt I manually set up an openmpi environment and execute the program in parallel over this environment. | ||
| Line 234: | Line 233: | ||
| </code> | </code> | ||
| - | Note that I originally started this process on campusrocks-1-0.local with two cores allocated. The process was eventually killed either by a cluster admin, or something else. I then decided to re run the program from campusrocks-0-6.local due to its larger amount of available ram. The assembly picked up where it left off and the process that previously was killed finished within a fairly short period of time. | + | Note that I originally started this process on campusrocks-1-0.local with two cores allocated per available compute node on campusrocks. The process was eventually killed either by a cluster admin, or something else. I then decided to re run the program from campusrocks-0-6.local due to its larger amount of available ram. The assembly picked up where it left off and the process that previously was killed finished within a fairly short period of time. |
| ===== References ===== | ===== References ===== | ||
| <refnotes>notes-separator: none</refnotes> | <refnotes>notes-separator: none</refnotes> | ||
| ~~REFNOTES cite~~ | ~~REFNOTES cite~~ | ||
archive/bioinformatic_tools/abyss.txt · Last modified: 2015/07/28 06:23 by ceisenhart
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