User Tools

Site Tools


archive:archive

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Next revision Both sides next revision
archive:archive [2015/07/15 19:29]
ceisenhart Major changes under way, please let me finish before doing more
archive:archive [2015/07/28 17:04]
ceisenhart ↷ Page moved from archive to archive:archive
Line 1: Line 1:
 This is the archive for pages that are no longer being supported. ​ Ideally these pages will be renamed into the '​archive'​ namespace. ​ This is the archive for pages that are no longer being supported. ​ Ideally these pages will be renamed into the '​archive'​ namespace. ​
  
-  ​* [[Spring 2015 syllabus]]  ​The lecture schedule ​and registered note takers. ​ + 
-  * [[Teams]] Each team is attempting an assembly with a different program+**Archived files** 
-  * [[Summer 2015]] A page to organize summer work. +  ​* [[Archive::​bioinformatic_tools | bioinformatic_tools]]  
-  * [[Specific task]] +  * [[Archive::​banana_slugs_in_popular_culture | banana_slugs_in_popular_culture]] 
-  * [[Banana slug genome browser]] A guide for accessing ​and setting up the banana slug hub+  * [[Archive::​euchromatin_and_heterochromatin | Euchromatin ​and heterochromatin ]] 
-  * [[Backup directory]] Paths on Charles'​ hive account where assembly and raw data files are backed-up. +  * [[Archive::​contributors | An old contributors page ]]   
-  * [[Computer resources]] describes the computers and file systems available for this class, how to get an account, how the directories are organized, how to get file permissions set correctly, and so forth. +  * [[archive:​spring_2015_syllabus]] ​ The lecture schedule and registered note takers.  
-  * [[Lecture notes]] will have pointers to notes taken by the students for each lecture. ​ Two students will be designated each lecture to take notes, but others are encouraged to add their own notes to the wiki pages. +  * [[archive:​summer_2015]] A page to organize summer work. 
-  * [[Other mollusk genomes]] has a list of other mollusks that have been sequenced, and where the data for them is.  Prior mollusk genomes may be very useful in annotating the banana slug. +  * [[archive:​other_mollusk_genomes]] has a list of other mollusks that have been sequenced, and where the data for them is.  Prior mollusk genomes may be very useful in annotating the banana slug. 
-  * [[Euchromatin and Heterochromatin]] +  * [[archive:​lab_protocols]] will describe how the slugs were collected, the DNA extracted, ​and all the wet-lab work was done to produce the data files
-  * [[RNA]]+  * [[archive:​backup_directory]] Paths on Charles'​ hive account where assembly and raw data files are backed-up. 
 + 
 + 
 + 
 +**Deprecated links (things to be archived)** 
 +  * [[archive:​specific_task]] 
 +  * [[about_the_class:​lecture_notes]] will have pointers to notes taken by the students for each lecture. ​ Two students will be designated each lecture to take notes, but others are encouraged to add their own notes to the wiki pages. 
 +  * [[archive:rna]]
   * [[computer_resources:​data|Data available]] lists the datasets that we have to assemble and annotate the genome. ​ The data will not appear on the wiki itself (due to the size of the files), but descriptions of it and pointers to the files will.   * [[computer_resources:​data|Data available]] lists the datasets that we have to assemble and annotate the genome. ​ The data will not appear on the wiki itself (due to the size of the files), but descriptions of it and pointers to the files will.
   * [[computer_resources:​assemblies|Assemblies]] lists the attempted assemblies (separated into subdirectories by organism).   * [[computer_resources:​assemblies|Assemblies]] lists the attempted assemblies (separated into subdirectories by organism).
-  * [[Lab protocols]] will describe how the slugs were collected, the DNA extracted, and all the wet-lab work was done to produce the data files. +  * [[archive:​sequencing_technologies]] lists the platforms used for getting data on the banana slug. From there, we'll have pages on each technology explaining how it works, what sort of data it produces, what its common errors modes are, and other information needed to work with the data. 
-  * [[Sequencing technologies]] lists the platforms used for getting data on the banana slug. From there, we'll have pages on each technology explaining how it works, what sort of data it produces, what its common errors modes are, and other information needed to work with the data. +  * [[archive:​review_articles]] will list helpful review articles discovered. ​
-  * [[Bioinformatic tools]] lists the available tools for assembly and annotation. ​ Each tool will have its own web page describing its strengths and weaknesses, and what we managed to do using that tool. +
-  * [[Banana slug biology]] collects the information we can find about the biology of //Ariolimax dolichophallus//​ (and other //​Ariolimax//​ species). +
-  * [[Banana slugs in popular culture]] collects random information about banana slugs that can't really be classified as "​biology"​. ​ This will probably contain mainly information about the slug as the UCSC mascot. +
-  * [[Contributors]] will list the main contributors to this project (providing pictures and links to their own pages as appropriate). +
-  * [[Review Articles]] will list helpful review articles discovered. ​+
  
 +**And all the crap in the site manager**
archive/archive.txt · Last modified: 2015/09/11 22:06 by 5.9.83.211