about_the_class:the_basics
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- 20mer_miseq_dist.pdf
- 2015/04/17 22:14
- 6.7 KB
- 2012_vs_2015_assemblies.png
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- 2015/05/21 22:08
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- 20100419_banana_slug_seminar.pdf
- 2015/04/20 17:17
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- abysspresentation1.pdf
- 2015/05/05 18:12
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- adapterremovalchart.png
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- 2015/04/21 16:52
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- 2015/05/04 18:50
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- 2015/05/04 18:53
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- alldatatrimmeddedup150430.pdf
- 2015/05/04 18:46
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- annotation_workshop_ucsc.pdf
- 2015/05/29 18:42
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- ariolimax_bibliography_janet_leonard.doc
- 2010/04/24 17:11
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- ariolimax_dolichophallus_cox1.pdf
- 2015/05/17 05:15
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- 2015/05/12 06:00
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- blast_results_10k_scaffolds.png
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- 2015/05/10 15:54
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- bme235_meraculous_report_2.pdf
- 2015/05/11 17:38
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- bme_235_meraculous_report_1.pdf
- 2015/04/21 09:33
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- bs-mk_seqprep_dupremoved_ec_r1.pdf
- 2015/05/21 19:37
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- bs-mk_seqprep_dupremoved_ec_r2.pdf
- 2015/05/21 19:37
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- bs_mk_noadap_r1.fastq_fastqc_report.pdf
- 2015/05/19 15:19
- 672.9 KB
- bs_mk_noadap_r2.fastq_fastqc_report.pdf
- 2015/05/19 15:20
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- cdna_charlessmart_al_pe_p_ashley5_pe_p_al_05202015.png
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- 2015/05/25 20:44
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- chris_brumbaugh_150x200.jpg
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- 2010/04/07 00:26
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- config_file.pdf
- 2015/05/08 17:41
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- config_file_run2.pdf
- 2015/05/13 19:08
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- cox1.pdf
- 2015/05/17 05:14
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- dbg-assembly-v1.pdf
- 2015/04/20 17:17
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- discovar_team_presentation_2.pdf
- 2015/05/20 17:49
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- discovardenovoflowchartwithqc.png
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- 2015/05/01 18:32
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- ec_merged_data_kmergenie.pdf
- 2015/04/21 19:29
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- edward-liaw-150x200.jpg
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- 2011/06/12 01:28
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- fastqc_bs-mk_catccgg_r1.pdf
- 2015/05/06 22:54
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- fastqc_bs-mk_catccgg_r2.pdf
- 2015/05/06 22:54
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- fastqc_bs-tag_gtagagg_r1.pdf
- 2015/05/06 20:03
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- fastqc_bs-tag_gtagagg_r2.pdf
- 2015/05/06 20:03
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- fastqc_bs-tag_seqprep_dupremoved_r1.pdf
- 2015/05/20 16:03
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- fastqc_bs-tag_seqprep_dupremoved_r2.pdf
- 2015/05/20 16:03
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- fastqc_bs_mk_noadap_r1.pdf
- 2015/05/17 21:41
- 310.1 KB
- fastqc_bs_mk_noadap_r2.pdf
- 2015/05/17 21:41
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- fastqc_bs_tag_noadap_pair1.pdf
- 2015/05/17 20:27
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- fastqc_bs_tag_noadap_pair2.pdf
- 2015/05/17 20:29
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- fastqc_myskewer_41_dupr_r1.pdf
- 2015/05/21 15:35
- 1.4 MB
- fastqc_myskewer_41_dupr_r2.pdf
- 2015/05/21 15:35
- 1.4 MB
- fastqc_skewer_41_seqprep_duprem_r1.pdf
- 2015/05/21 15:40
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- fastqc_skewer_41_seqprep_duprem_r2.pdf
- 2015/05/21 15:40
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- fastqc_skewer_42_dupremoved_r1.pdf
- 2015/05/21 18:25
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- fastqc_skewer_42_dupremoved_r2.pdf
- 2015/05/21 18:25
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- fastqc_skewer_run2_sw041_pair1.pdf
- 2015/05/21 15:32
- 1.4 MB
- fastqc_skewer_run2_sw041_pair2.pdf
- 2015/05/21 15:32
- 1.5 MB
- fastqc_sw041-trimmed-pair1_mp1.pdf
- 2015/05/19 15:58
- 660.6 KB
- fastqc_sw041-trimmed-pair2_mp1.pdf
- 2015/05/19 15:58
- 885.5 KB
- fastqc_sw041_1_pair1.pdf
- 2015/05/20 23:17
- 909 KB
- fastqc_sw041_1_pair2.pdf
- 2015/05/20 23:17
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- fastqc_sw041_2-trimmed-pair1_mp2.pdf
- 2015/05/19 15:59
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- fastqc_sw041_2-trimmed-pair2_mp2.pdf
- 2015/05/19 15:59
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- fastqc_sw041_2_pair1.pdf
- 2015/05/20 23:17
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- fastqc_sw041_2_pair2.pdf
- 2015/05/20 23:17
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- fastqc_sw042-trimmed-pair1_mp1.pdf
- 2015/05/19 17:11
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- fastqc_sw042-trimmed-pair2_mp1.pdf
- 2015/05/19 17:11
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- fastqc_sw042_2-trimmed-pair1_mp2.pdf
- 2015/05/19 17:12
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- fastqc_sw042_2-trimmed-pair2_mp2.pdf
- 2015/05/19 17:12
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- fastqc_ucsf_bs-mk_catccgg_r1_tr....fastq.gz_fastqc_report.pdf
- 2015/05/18 22:36
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- fastqc_ucsf_bs-mk_catccgg_r2_tr....fastq.gz_fastqc_report.pdf
- 2015/05/18 22:36
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- 2015/05/20 01:48
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- 2015/05/01 18:50
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- 2015/05/12 05:43
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- 2010/03/30 20:56
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- finalpresentation_bme235.pdf
- 2015/06/09 19:15
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- 2015/05/15 19:14
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- 2015/05/04 20:20
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- 2010/03/31 02:47
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- 2010/03/31 04:09
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- genomics_workshop_ucsc.pdf
- 2015/04/23 18:30
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- herbertlee.jpg
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- 2010/04/07 01:50
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- hiseq_20mer.pdf
- 2015/04/17 22:01
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- hiseq_20mer_plot.pdf
- 2015/04/17 22:03
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- histogram_for_10_run.png
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- 2015/05/12 04:23
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- 2015/05/12 04:24
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- histogram_of_contig_length_discovar_10_run.png
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- 2015/05/09 02:57
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- histogram_of_contig_length_discovar_10_run_log_freq_.png
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- histogram_of_contig_length_discovar_10_run_log_y_.png
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- 2015/05/09 04:17
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- illumina-sequencing-v1.pdf
- 2015/04/17 22:31
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- 2010/03/30 03:35
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- 2010/03/30 03:48
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- 2010/03/30 17:10
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- 2010/03/30 04:08
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- 2010/04/07 17:13
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- 2010/04/05 23:57
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- k-mers-v1.pdf
- 2015/04/20 17:17
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- kmergenie.dat.sw018_sw019_seqprep_merged.pdf
- 2015/05/14 02:24
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- kmergenie.dat.sw018_sw019_seqprep_merged.png
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- 2015/05/14 02:26
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- kmergenie_output_adapter_trimming_only.pdf
- 2015/04/21 18:26
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- kmergenie_output_ec_adapter_trimming.pdf
- 2015/04/21 18:37
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- lucigen_insert_distribution.png
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- 2015/05/19 05:15
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- lucigen_insert_size_distribution.jpg
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- 2015/05/19 05:18
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- lucigen_mp_dupremoved_r1.pdf
- 2015/05/22 00:17
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- lucigen_mp_dupremoved_r2.pdf
- 2015/05/22 00:17
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- ma160-nxseq-long-mate-pair-library-kit.pdf
- 2015/04/16 22:52
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- merged_output.dat.pdf
- 2015/04/21 05:45
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- merged_output_final.dat.pdf
- 2015/04/21 18:11
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- 2015/04/21 18:12
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- meyer_kircher.pdf
- 2015/04/10 18:39
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- 2010/03/31 03:55
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- 2010/03/31 04:10
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- miseq_preqc_report.pdf
- 2015/04/10 21:33
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- pooled_hiseq_preqc_report.pdf
- 2015/04/15 16:27
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- pooleddatapreqcresults.pdf
- 2015/05/04 19:00
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- 2015/04/21 16:54
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- preqc_report_sw041.pdf
- 2015/05/13 06:15
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- preqc_report_sw042.pdf
- 2015/05/13 06:10
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- primer_design.pdf
- 2015/05/30 02:02
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- primer_design.rtf
- 2015/05/30 02:00
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- primer_design_location.pdf
- 2015/05/30 02:03
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- primer_design_locations.pdf
- 2015/06/02 03:19
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- r1_ijs8_mates_icc5_sw023...001.fastq_fastqc_report.pdf
- 2015/05/03 06:39
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- r1_ijs8_mates_icc5_sw023_s60_l001_r1_001.fastq.200_fastqc_report.pdf
- 2015/05/10 21:44
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- r2_ijs8_mates_icc5_sw023...001.fastq_fastqc_report.pdf
- 2015/05/03 06:39
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- r2_ijs8_mates_icc5_sw023_s60_l001_r2_001.fastq.200_fastqc_report.pdf
- 2015/05/10 21:50
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- rnagel.png
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- 2015/05/08 00:22
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- rnaseq.pdf
- 2015/05/08 09:17
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- 2011/03/30 03:48
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- 2015/05/08 17:08
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- 2015/05/12 15:46
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- sga_bme235_s15.pdf
- 2015/04/27 16:59
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- 2015/04/17 23:50
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- 2015/04/18 00:02
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- 2010/03/31 03:56
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- 2010/03/31 04:12
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- skewer_run2_sw042_1-pair1fastq.pdf
- 2015/05/29 19:18
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- skewer_run2_sw042_1-pair2fastq.pdf
- 2015/05/29 19:18
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- 2015/04/23 23:23
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- 2015/04/23 23:23
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- slug_mate_pair_presentation.pdf
- 2015/05/08 21:40
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- slugoutput.dat.pdf
- 2015/04/21 05:44
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- 2015/05/24 19:29
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- soapassembly2_update.pptx.pdf
- 2015/05/13 17:49
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- sw018_adaptertrimmed_dup..._r1.pdf
- 2015/05/05 06:02
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- sw018_adaptertrimmed_dup..._r2.pdf
- 2015/05/05 06:02
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- sw018_s1_l007_r1_001.fastq.pdf
- 2015/04/14 15:05
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- sw018_s1_l007_r2_001.fastq.pdf
- 2015/04/14 15:07
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- sw018_sw019_adapter_seqprep.png
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- 2015/05/14 02:33
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- sw018_tagttcc_l001_r1_001.fastq.pdf
- 2015/05/06 18:14
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- sw018_tagttcc_l001_r2_001.fastq.pdf
- 2015/05/06 18:14
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- sw019_adaptertrimmed_dup..._r1.pdf
- 2015/05/05 06:02
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- sw019_adaptertrimmed_dup..._r2.pdf
- 2015/05/05 06:02
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- sw019_s1_l001_r1_001.fastq_fastqc_report.pdf
- 2015/04/08 19:46
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- sw019_s1_l001_r2_001.fastq_fastqc_report.pdf
- 2015/04/08 19:45
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- sw019_s2_l008_r1_001.pdf
- 2015/04/15 20:11
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- sw019_s2_l008_r2_001.pdf
- 2015/04/15 20:11
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- sw019_tggcaat_l001_r1_001.fastq.pdf
- 2015/05/06 18:17
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- sw019_tggcaat_l001_r2_001.fastq.pdf
- 2015/05/06 18:17
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- sw041.r1.trimmed.fastq_fastqc_report.pdf
- 2015/05/12 03:02
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- sw041.r2.trimmed.fastq_fastqc_report.pdf
- 2015/05/12 03:03
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- sw041_adapter_trimmed_2-...ir1.pdf
- 2015/05/18 17:05
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- sw041_adapter_trimmed_2-...ir2.pdf
- 2015/05/18 17:05
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- 2015/05/19 05:19
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- 2015/05/28 05:24
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- sw042.r1.trimmed.fastq_fastqc_report.pdf
- 2015/05/12 03:08
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- sw042.r2.trimmed.fastq_fastqc_report.pdf
- 2015/05/12 03:08
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- 2015/05/19 05:21
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- team_5_report_1.pdf
- 2015/04/29 21:35
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- trapnell_et_al._2010.pdf
- 2015/05/18 17:29
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- ucsf_bs-mk_preqc_report.pdf
- 2015/05/26 18:13
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- ucsf_bs-tag_preqc_report.pdf
- 2015/05/25 06:07
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- ucsf_new_lib_preqc_report.pdf
- 2015/05/20 03:33
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- ucsf_sw018_preqc_report.pdf
- 2015/05/24 06:40
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- ucsf_sw018_sw019_report.pdf
- 2015/05/13 01:39
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- ucsf_sw019_preqc_report.pdf
- 2015/05/25 05:59
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- undetermined_s0_l008_r1_001.pdf
- 2015/04/16 08:08
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![[root]](/about_the_class:the_basics?ns=&tab_files=files&do=media&tab_details=view&image=sw042_insert_size_distribution.jpg){kind=link}
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about_the_class/the_basics.txt · Last modified: 2015/09/12 02:00 by 5.9.83.211
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