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====== Notes ====== ^ Date ^ Topic ^ | Mon Mar 29 14:00-15:10 | [[lecture_notes:03-29-2010|Course Outline]] | | Wed Mar 31 14:00-15:10 | [[lecture_notes:03-31-2010|Sequencing Technologies]] | | Fri Apr 02 14:00-15:10 | [[lecture_notes:04-02-2010|Resources]] | | Mon Apr 05 14:00-15:10 | [[lecture_notes:04-05-2010|Assembly Overview]] | | Wed Apr 07 14:00-15:10 | [[lecture_notes:04-07-2010|Base Space, Flow Space, Color Space]] | | Fri Apr 09 14:00-15:10 | [[lecture_notes:04-09-2010|Assembler Graphs]] | | Mon Apr 12 14:00-15:10 | [[lecture_notes:04-12-2010|Sample Preparation]] | | Wed Apr 14 14:00-15:10 | [[lecture_notes:04-14-2010|Library Construction]] | | Fri Apr 16 14:00-15:10 | [[lecture_notes:04-16-2010|Newbler Assembly on POG]] | | Mon Apr 19 14:00-15:10 | [[lecture_notes:04-19-2010|Presentation on Assemblers and Velvet]] | | Wed Apr 21 14:00-15:10 | [[lecture_notes:04-21-2010|Newbler Assembly on POG and using Solid Mate Pair Data]] | | Fri Apr 23 14:00-15:10 | [[lecture_notes:04-23-2010|Banana Slug Biology - Guest Lecture]] | | Mon Apr 26 14:00-15:10 | [[lecture_notes:04-26-2010|Tool Review: Galt and Velvet]] | | Wed Apr 28 14:00-15:10 | [[lecture_notes:04-28-2010|Tool Review: Euler-SR (John) and MIRA (Michael)]] | | Fri Apr 30 14:00-15:10 | [[lecture_notes:04-30-2010|map-colorspace5 and contig ordering; Estimating Genome Size]] | | Mon May 03 14:00-15:10 | [[lecture_notes:05-03-2010|Burrows Wheeler Transform]] | | Wed May 05 14:00-15:10 | [[lecture_notes:05-05-2010|Mate-paired data to fix assembly]] | | Wed May 07 14:00-15:10 | [[lecture_notes:05-07-2010|Approximate Search and BWA]] | | Mon May 10 14:00-15:10 | [[lecture_notes:05-10-2010|Tool Review : SSAKE by John Kim, and Slug locomotion by Jenny]] | | Wed May 12 14:00-15:10 | [[lecture_notes:05-12-2010|Tool Review : PCAP by Shyamini]] | | Fri May 14 14:00-15:10 | No class | | Mon May 17 14:00-15:10 | [[lecture_notes:05-17-2010|Genome Annotation with RAST and Artemis by Jeff Long]]| | Wed May 19 14:00-15:10 | [[lecture_notes:05-19-2010|Thomas Juetteman on ALLPATHS, Michael on Mira Internals]]| | Fri May 21 14:00-15:10 | [[lecture_notes:05-21-2010|Patricia Chan on setting up a genome browser]]| | Mon May 24 14:00-15:10 | [[lecture_notes:05-24-2010|Slug assemblies and pluck-scripts]]| | Wed May 26 14:00-15:10 | [[lecture_notes:05-26-2010|pluck-scripts]]| | Fri May 28 14:00-15:10 | [[lecture_notes:05-28-2010|pluck-scripts cont.]]|
