about_the_class:lecture_notes
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about_the_class:lecture_notes [2011/05/31 23:18] eyliaw [Spring 2011] |
about_the_class:lecture_notes [2015/07/28 06:01] (current) ceisenhart ↷ Page moved from lecture_notes to about_the_class:lecture_notes |
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| ====== Notes ====== | ====== Notes ====== | ||
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| + | ===== Spring 2015 ===== | ||
| + | For syllabus and note taker schedule please see the [[archive:spring_2015_syllabus]] | ||
| + | |||
| + | ^ Date ^ Topic ^ | ||
| + | | Mon Mar 30 09:30-10:40 | [[lecture_notes:03-30-2015|Course outline]] | | ||
| + | | Wed Apr 1 09:30-10:40 | [[lecture_notes:04-01-2015|Banana slug biology]] | | ||
| + | | Fri Apr 3 09:30-10:40 | [[lecture_notes:04-03-2015|Dissection, extraction, and library preparation]] | | ||
| + | | Mon Apr 6 09:30-10:40 | [[lecture_notes:04-06-2015|Denovo-assembly part:1]] | | ||
| + | | Wed Apr 8 09:30-10:40 | [[lecture_notes:04-08-2015|Denovo-assembly part:2]] | | ||
| + | | Fri Apr 10 09:30-10:40 | [[lecture_notes:04-10-2015|Denovo-assembly part:3]] | | ||
| + | | Mon Apr 13 09:30-10:40 | [[lecture_notes:04-13-2015|Illumina sequencing technology]] | | ||
| + | | Wed Apr 15 09:30-10:40 | [[lecture_notes:04-15-2015|K-mer spectra analysis]] | | ||
| + | | Fri Apr 17 09:30-10:40 | [[lecture_notes:04-17-2015|Genome assembly - theory and practice]] | | ||
| + | | Mon Apr 20 09:30-10:40 | [[lecture_notes:04-20-2015|Team 1 report]] | | ||
| + | | Wed Apr 22 09:30-10:40 | [[lecture_notes:04-22-2015|Team 2 report]] | | ||
| + | | Fri Apr 24 09:30-10:40 | [[lecture_notes:04-24-2015|Team 3 report]] | | ||
| + | | Mon Apr 27 09:30-10:40 | [[lecture_notes:04-27-2015|Team 4 report]] | | ||
| + | | Wed Apr 29 09:30-10:40 | [[lecture_notes:04-29-2015|Team 5 report]] | | ||
| + | | Fri May 1 09:30-10:40 | [[lecture_notes:05-01-2015|Population genetics]] | | ||
| + | | Mon May 4 09:30-10:40 | [[lecture_notes:05-04-2015|Mate pair libraries]] | | ||
| + | | Wed May 6 09:30-10:40 | [[lecture_notes:05-06-2015|RNAseq]] | | ||
| + | | Fri May 8 09:30-10:40 | [[lecture_notes:05-08-2015|Strategy Session]] | | ||
| + | | Mon May 11 09:30-10:40 | [[lecture_notes:05-11-2015|Team 1 report]] | | ||
| + | | Wed May 13 09:30-10:40 | [[lecture_notes:05-13-2015|Team 2 report]] | | ||
| + | | Fri May 15 09:30-10:40 | [[lecture_notes:05-15-2015|Team 3 report]] | | ||
| + | | Mon May 18 09:30-10:40 | [[lecture_notes:05-18-2015|Team 4 report]] | | ||
| + | | Wed May 20 09:30-10:40 | [[lecture_notes:05-20-2015|Team 5 report]] | | ||
| + | | Fri May 22 09:30-10:40 | [[lecture_notes:05-22-2015|Assembly of repeat regions]] | | ||
| + | | Mon May 25 09:30-10:40 | Holiday | | ||
| + | | Wed May 27 09:30-10:40 | [[lecture_notes:05-27-2015|Genome annotation]] | | ||
| + | | Fri May 29 09:30-10:40 | [[lecture_notes:05-29-2015|Jellyfish internals for kmer counting]] | | ||
| + | | Mon Jun 1 09:30-10:40 | [[lecture_notes:06-01-2015|Burrows-Wheeler transform]] | | ||
| + | | Wed Jun 3 09:30-10:40 | [[lecture_notes:06-03-2015|Lecture title]] | | ||
| + | | Fri Jun 5 09:30-10:40 | [[lecture_notes:06-05-2015|Final analysis II]] | | ||
| ===== Spring 2011 ===== | ===== Spring 2011 ===== | ||
| Line 24: | Line 59: | ||
| | Mon May 16 14:00-15:00 | [[lecture_notes:05-16-2011|Seqprep]] | | | Mon May 16 14:00-15:00 | [[lecture_notes:05-16-2011|Seqprep]] | | ||
| | Wed May 18 14:00-15:00 | [[lecture_notes:05-18-2011|K-mer Counting Theory]] | | | Wed May 18 14:00-15:00 | [[lecture_notes:05-18-2011|K-mer Counting Theory]] | | ||
| - | | Fri May 20 14:00-15:00 | [[lecture_notes:05-20-2011|String Graph Assembler]] | | + | | Fri May 20 14:00-15:00 | [[lecture_notes:05-20-2011|Sanger String Graph Assembler]] | |
| | Mon May 23 14:00-15:00 | [[lecture_notes:05-23-2011|Guest Lecture: Patricia Chan on setting up the UCSC Genome Browser]] | | | Mon May 23 14:00-15:00 | [[lecture_notes:05-23-2011|Guest Lecture: Patricia Chan on setting up the UCSC Genome Browser]] | | ||
| | Wed May 25 14:00-15:00 | [[lecture_notes:05-25-2011|Paired End Assembler]] | | | Wed May 25 14:00-15:00 | [[lecture_notes:05-25-2011|Paired End Assembler]] | | ||
| | Fri May 27 14:00-15:00 | [[lecture_notes:05-27-2011|Review]] | | | Fri May 27 14:00-15:00 | [[lecture_notes:05-27-2011|Review]] | | ||
| + | | Fri June 3 14:00-15:00 | [[lecture_notes:06-03-2011|SARUMAN Paper: Sam Vohr]] | | ||
| ===== Spring 2010 ===== | ===== Spring 2010 ===== | ||
| ^ Date ^ Topic ^ | ^ Date ^ Topic ^ | ||
about_the_class/lecture_notes.1306883911.txt.gz · Last modified: 2011/05/31 23:18 by eyliaw
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