This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Last revision Both sides next revision | ||
about_the_class:lecture_notes [2011/04/25 21:06] svohr |
about_the_class:lecture_notes [2015/07/18 21:21] 65.19.138.34 ↷ Links adapted because of a move operation |
||
---|---|---|---|
Line 1: | Line 1: | ||
====== Notes ====== | ====== Notes ====== | ||
+ | |||
+ | ===== Spring 2015 ===== | ||
+ | For syllabus and note taker schedule please see the [[archive:spring_2015_syllabus]] | ||
+ | |||
+ | ^ Date ^ Topic ^ | ||
+ | | Mon Mar 30 09:30-10:40 | [[lecture_notes:03-30-2015|Course outline]] | | ||
+ | | Wed Apr 1 09:30-10:40 | [[lecture_notes:04-01-2015|Banana slug biology]] | | ||
+ | | Fri Apr 3 09:30-10:40 | [[lecture_notes:04-03-2015|Dissection, extraction, and library preparation]] | | ||
+ | | Mon Apr 6 09:30-10:40 | [[lecture_notes:04-06-2015|Denovo-assembly part:1]] | | ||
+ | | Wed Apr 8 09:30-10:40 | [[lecture_notes:04-08-2015|Denovo-assembly part:2]] | | ||
+ | | Fri Apr 10 09:30-10:40 | [[lecture_notes:04-10-2015|Denovo-assembly part:3]] | | ||
+ | | Mon Apr 13 09:30-10:40 | [[lecture_notes:04-13-2015|Illumina sequencing technology]] | | ||
+ | | Wed Apr 15 09:30-10:40 | [[lecture_notes:04-15-2015|K-mer spectra analysis]] | | ||
+ | | Fri Apr 17 09:30-10:40 | [[lecture_notes:04-17-2015|Genome assembly - theory and practice]] | | ||
+ | | Mon Apr 20 09:30-10:40 | [[lecture_notes:04-20-2015|Team 1 report]] | | ||
+ | | Wed Apr 22 09:30-10:40 | [[lecture_notes:04-22-2015|Team 2 report]] | | ||
+ | | Fri Apr 24 09:30-10:40 | [[lecture_notes:04-24-2015|Team 3 report]] | | ||
+ | | Mon Apr 27 09:30-10:40 | [[lecture_notes:04-27-2015|Team 4 report]] | | ||
+ | | Wed Apr 29 09:30-10:40 | [[lecture_notes:04-29-2015|Team 5 report]] | | ||
+ | | Fri May 1 09:30-10:40 | [[lecture_notes:05-01-2015|Population genetics]] | | ||
+ | | Mon May 4 09:30-10:40 | [[lecture_notes:05-04-2015|Mate pair libraries]] | | ||
+ | | Wed May 6 09:30-10:40 | [[lecture_notes:05-06-2015|RNAseq]] | | ||
+ | | Fri May 8 09:30-10:40 | [[lecture_notes:05-08-2015|Strategy Session]] | | ||
+ | | Mon May 11 09:30-10:40 | [[lecture_notes:05-11-2015|Team 1 report]] | | ||
+ | | Wed May 13 09:30-10:40 | [[lecture_notes:05-13-2015|Team 2 report]] | | ||
+ | | Fri May 15 09:30-10:40 | [[lecture_notes:05-15-2015|Team 3 report]] | | ||
+ | | Mon May 18 09:30-10:40 | [[lecture_notes:05-18-2015|Team 4 report]] | | ||
+ | | Wed May 20 09:30-10:40 | [[lecture_notes:05-20-2015|Team 5 report]] | | ||
+ | | Fri May 22 09:30-10:40 | [[lecture_notes:05-22-2015|Assembly of repeat regions]] | | ||
+ | | Mon May 25 09:30-10:40 | Holiday | | ||
+ | | Wed May 27 09:30-10:40 | [[lecture_notes:05-27-2015|Genome annotation]] | | ||
+ | | Fri May 29 09:30-10:40 | [[lecture_notes:05-29-2015|Jellyfish internals for kmer counting]] | | ||
+ | | Mon Jun 1 09:30-10:40 | [[lecture_notes:06-01-2015|Burrows-Wheeler transform]] | | ||
+ | | Wed Jun 3 09:30-10:40 | [[lecture_notes:06-03-2015|Lecture title]] | | ||
+ | | Fri Jun 5 09:30-10:40 | [[lecture_notes:06-05-2015|Final analysis II]] | | ||
===== Spring 2011 ===== | ===== Spring 2011 ===== | ||
Line 17: | Line 52: | ||
| Fri Apr 22 14:00-15:00 | [[lecture_notes:04-22-2011|Burrows-Wheeler Transform]] | | | Fri Apr 22 14:00-15:00 | [[lecture_notes:04-22-2011|Burrows-Wheeler Transform]] | | ||
| Mon Apr 25 14:00-15:00 | [[lecture_notes:04-25-2011|More Burrows-Wheeler Transform]] | | | Mon Apr 25 14:00-15:00 | [[lecture_notes:04-25-2011|More Burrows-Wheeler Transform]] | | ||
+ | | Wed Apr 27 14:00-15:00 | [[lecture_notes:04-27-2011|454 Presentation]] | | ||
+ | | Fri Apr 29 14:00-15:00 | [[lecture_notes:04-29-2011|Guest Lecture: Janet Leonard and John Pearse on Banana Slug Biology]] | | ||
+ | | Mon May 9 14:00-15:00 | [[lecture_notes:05-09-2011|Quake paper: Edward Liaw]] | | ||
+ | | Wed May 11 14:00-15:00 | [[lecture_notes:05-11-2011|SOAP-denovo paper: Sam Vohr]] | | ||
+ | | Fri May 13 14:00-15:00 | [[lecture_notes:05-13-2011|BWA results, insert length analysis]] | | ||
+ | | Mon May 16 14:00-15:00 | [[lecture_notes:05-16-2011|Seqprep]] | | ||
+ | | Wed May 18 14:00-15:00 | [[lecture_notes:05-18-2011|K-mer Counting Theory]] | | ||
+ | | Fri May 20 14:00-15:00 | [[lecture_notes:05-20-2011|Sanger String Graph Assembler]] | | ||
+ | | Mon May 23 14:00-15:00 | [[lecture_notes:05-23-2011|Guest Lecture: Patricia Chan on setting up the UCSC Genome Browser]] | | ||
+ | | Wed May 25 14:00-15:00 | [[lecture_notes:05-25-2011|Paired End Assembler]] | | ||
+ | | Fri May 27 14:00-15:00 | [[lecture_notes:05-27-2011|Review]] | | ||
+ | | Fri June 3 14:00-15:00 | [[lecture_notes:06-03-2011|SARUMAN Paper: Sam Vohr]] | | ||
===== Spring 2010 ===== | ===== Spring 2010 ===== | ||
^ Date ^ Topic ^ | ^ Date ^ Topic ^ |