about_the_class:lecture_notes
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about_the_class:lecture_notes [2010/05/26 21:06] hyjkim |
about_the_class:lecture_notes [2011/05/31 23:19] eyliaw [Spring 2011] |
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| ====== Notes ====== | ====== Notes ====== | ||
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| + | ===== Spring 2011 ===== | ||
| + | ^ Date ^ Topic ^ | ||
| + | | Mon Mar 28 14:00-15:10 | [[lecture_notes:03-28-2011|Course Outline]] | | ||
| + | | Wed Mar 30 14:00-15:10 | [[lecture_notes:03-30-2011|Sequencing Technologies]] | | ||
| + | | Fri Apr 1 14:00-15:10 | [[lecture_notes:04-01-2011|Guest Lecture: Nader Pourmand on Sequencing Technologies]] | | ||
| + | | Mon Apr 4 14:00-15:10 | [[lecture_notes:04-04-2011|Assembly Overview]] | | ||
| + | | Wed Apr 6 14:00-15:10 | [[lecture_notes:04-07-2011|Jellyfish]] | | ||
| + | | Fri Apr 8 14:00-15:10 | [[lecture_notes:04-08-2011|Jellyfish Results]] | | ||
| + | | Mon Apr 11 14:00-15:10 | [[lecture_notes:04-11-2011|Guest Lecture: Graham Ruby on PRICE]] | | ||
| + | | Wed Apr 13 14:00-15:10 | [[lecture_notes:04-13-2011|Guest Lecture: Daniel Zerbino on Velvet]] | | ||
| + | | Fri Apr 15 14:00-15:00 | [[lecture_notes:04-15-2011|Resources]] | | ||
| + | | Mon Apr 18 14:00-15:00 | [[lecture_notes:04-18-2011|Game Plan]] | | ||
| + | | Wed Apr 20 14:00-15:00 | [[lecture_notes:04-20-2011|More Jellyfish]] | | ||
| + | | Fri Apr 22 14:00-15:00 | [[lecture_notes:04-22-2011|Burrows-Wheeler Transform]] | | ||
| + | | Mon Apr 25 14:00-15:00 | [[lecture_notes:04-25-2011|More Burrows-Wheeler Transform]] | | ||
| + | | Wed Apr 27 14:00-15:00 | [[lecture_notes:04-27-2011|454 Presentation]] | | ||
| + | | Fri Apr 29 14:00-15:00 | [[lecture_notes:04-29-2011|Guest Lecture: Janet Leonard and John Pearse on Banana Slug Biology]] | | ||
| + | | Mon May 9 14:00-15:00 | [[lecture_notes:05-09-2011|Quake paper: Edward Liaw]] | | ||
| + | | Wed May 11 14:00-15:00 | [[lecture_notes:05-11-2011|SOAP-denovo paper: Sam Vohr]] | | ||
| + | | Fri May 13 14:00-15:00 | [[lecture_notes:05-13-2011|BWA results, insert length analysis]] | | ||
| + | | Mon May 16 14:00-15:00 | [[lecture_notes:05-16-2011|Seqprep]] | | ||
| + | | Wed May 18 14:00-15:00 | [[lecture_notes:05-18-2011|K-mer Counting Theory]] | | ||
| + | | Fri May 20 14:00-15:00 | [[lecture_notes:05-20-2011|Sanger String Graph Assembler]] | | ||
| + | | Mon May 23 14:00-15:00 | [[lecture_notes:05-23-2011|Guest Lecture: Patricia Chan on setting up the UCSC Genome Browser]] | | ||
| + | | Wed May 25 14:00-15:00 | [[lecture_notes:05-25-2011|Paired End Assembler]] | | ||
| + | | Fri May 27 14:00-15:00 | [[lecture_notes:05-27-2011|Review]] | | ||
| + | ===== Spring 2010 ===== | ||
| ^ Date ^ Topic ^ | ^ Date ^ Topic ^ | ||
| | Mon Mar 29 14:00-15:10 | [[lecture_notes:03-29-2010|Course Outline]] | | | Mon Mar 29 14:00-15:10 | [[lecture_notes:03-29-2010|Course Outline]] | | ||
| Line 19: | Line 47: | ||
| | Mon May 03 14:00-15:10 | [[lecture_notes:05-03-2010|Burrows Wheeler Transform]] | | | Mon May 03 14:00-15:10 | [[lecture_notes:05-03-2010|Burrows Wheeler Transform]] | | ||
| | Wed May 05 14:00-15:10 | [[lecture_notes:05-05-2010|Mate-paired data to fix assembly]] | | | Wed May 05 14:00-15:10 | [[lecture_notes:05-05-2010|Mate-paired data to fix assembly]] | | ||
| - | | Wed May 07 14:00-15:10 | [[lecture_notes:05-07-2010|Approximate Search and BWA]] | | + | | Fri May 07 14:00-15:10 | [[lecture_notes:05-07-2010|Approximate Search and BWA]] | |
| | Mon May 10 14:00-15:10 | [[lecture_notes:05-10-2010|Tool Review : SSAKE by John Kim, and Slug locomotion by Jenny]] | | | Mon May 10 14:00-15:10 | [[lecture_notes:05-10-2010|Tool Review : SSAKE by John Kim, and Slug locomotion by Jenny]] | | ||
| | Wed May 12 14:00-15:10 | [[lecture_notes:05-12-2010|Tool Review : PCAP by Shyamini]] | | | Wed May 12 14:00-15:10 | [[lecture_notes:05-12-2010|Tool Review : PCAP by Shyamini]] | | ||
| Line 28: | Line 56: | ||
| | Mon May 24 14:00-15:10 | [[lecture_notes:05-24-2010|Slug assemblies and pluck-scripts]]| | | Mon May 24 14:00-15:10 | [[lecture_notes:05-24-2010|Slug assemblies and pluck-scripts]]| | ||
| | Wed May 26 14:00-15:10 | [[lecture_notes:05-26-2010|pluck-scripts]]| | | Wed May 26 14:00-15:10 | [[lecture_notes:05-26-2010|pluck-scripts]]| | ||
| + | | Fri May 28 14:00-15:10 | [[lecture_notes:05-28-2010|pluck-scripts cont.]]| | ||
| + | | Wed Jun 02 14:00-15:10 | [[lecture_notes:06-02-2010|Looking at related de-novo assemblies: Sea Hare and Panda]]| | ||
| + | | Fri Jun 04 14:00-15:10 | [[lecture_notes:06-04-2010|Pcap Pog Assembly and Colorspace Python Script]]| | ||
about_the_class/lecture_notes.txt · Last modified: 2015/07/28 06:01 by ceisenhart
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