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about_the_class:lecture_notes [2010/04/04 23:37] jlong |
about_the_class:lecture_notes [2011/04/04 23:37] svohr |
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====== Notes ====== | ====== Notes ====== | ||
- | * [[lecture_notes:03-29-2010|Mon Mar 29 14:00-15:10]] [ [[lecture_notes:Mar29|Original source]] ] | + | ===== Spring 2011 ===== |
- | * [[lecture_notes:03-31-2010|Wed Mar 31 14:00-15:10]] [ [[lecture_notes:Mar31|Original source]] ] | + | |
- | * [[lecture_notes:04-02-2010|Fri Apr 02 14:00-15:10]] [ [[lecutre_notes:Apr02|Original source]] ] | + | |
+ | ^ Date ^ Topic ^ | ||
+ | | Mon Mar 28 14:00-15:10 | [[lecture_notes:03-28-2011|Course Outline]] | | ||
+ | | Wed Mar 30 14:00-15:10 | [[lecture_notes:03-30-2011|Sequencing Technologies]] | | ||
+ | | Fri Apr 1 14:00-15:10 | [[lecture_notes:04-01-2011|Guest Lecture: Nader Pourmand on Sequencing Technologies]] | | ||
+ | | Mon Apr 4 14:00-15:10 | [[lecture_notes:04-04-2011|Assembly Overview]] | | ||
+ | ===== Spring 2010 ===== | ||
+ | ^ Date ^ Topic ^ | ||
+ | | Mon Mar 29 14:00-15:10 | [[lecture_notes:03-29-2010|Course Outline]] | | ||
+ | | Wed Mar 31 14:00-15:10 | [[lecture_notes:03-31-2010|Sequencing Technologies]] | | ||
+ | | Fri Apr 02 14:00-15:10 | [[lecture_notes:04-02-2010|Resources]] | | ||
+ | | Mon Apr 05 14:00-15:10 | [[lecture_notes:04-05-2010|Assembly Overview]] | | ||
+ | | Wed Apr 07 14:00-15:10 | [[lecture_notes:04-07-2010|Base Space, Flow Space, Color Space]] | | ||
+ | | Fri Apr 09 14:00-15:10 | [[lecture_notes:04-09-2010|Assembler Graphs]] | | ||
+ | | Mon Apr 12 14:00-15:10 | [[lecture_notes:04-12-2010|Sample Preparation]] | | ||
+ | | Wed Apr 14 14:00-15:10 | [[lecture_notes:04-14-2010|Library Construction]] | | ||
+ | | Fri Apr 16 14:00-15:10 | [[lecture_notes:04-16-2010|Newbler Assembly on POG]] | | ||
+ | | Mon Apr 19 14:00-15:10 | [[lecture_notes:04-19-2010|Presentation on Assemblers and Velvet]] | | ||
+ | | Wed Apr 21 14:00-15:10 | [[lecture_notes:04-21-2010|Newbler Assembly on POG and using Solid Mate Pair Data]] | | ||
+ | | Fri Apr 23 14:00-15:10 | [[lecture_notes:04-23-2010|Banana Slug Biology - Guest Lecture]] | | ||
+ | | Mon Apr 26 14:00-15:10 | [[lecture_notes:04-26-2010|Tool Review: Galt and Velvet]] | | ||
+ | | Wed Apr 28 14:00-15:10 | [[lecture_notes:04-28-2010|Tool Review: Euler-SR (John) and MIRA (Michael)]] | | ||
+ | | Fri Apr 30 14:00-15:10 | [[lecture_notes:04-30-2010|map-colorspace5 and contig ordering; Estimating Genome Size]] | | ||
+ | | Mon May 03 14:00-15:10 | [[lecture_notes:05-03-2010|Burrows Wheeler Transform]] | | ||
+ | | Wed May 05 14:00-15:10 | [[lecture_notes:05-05-2010|Mate-paired data to fix assembly]] | | ||
+ | | Fri May 07 14:00-15:10 | [[lecture_notes:05-07-2010|Approximate Search and BWA]] | | ||
+ | | Mon May 10 14:00-15:10 | [[lecture_notes:05-10-2010|Tool Review : SSAKE by John Kim, and Slug locomotion by Jenny]] | | ||
+ | | Wed May 12 14:00-15:10 | [[lecture_notes:05-12-2010|Tool Review : PCAP by Shyamini]] | | ||
+ | | Fri May 14 14:00-15:10 | No class | | ||
+ | | Mon May 17 14:00-15:10 | [[lecture_notes:05-17-2010|Genome Annotation with RAST and Artemis by Jeff Long]]| | ||
+ | | Wed May 19 14:00-15:10 | [[lecture_notes:05-19-2010|Thomas Juetteman on ALLPATHS, Michael on Mira Internals]]| | ||
+ | | Fri May 21 14:00-15:10 | [[lecture_notes:05-21-2010|Patricia Chan on setting up a genome browser]]| | ||
+ | | Mon May 24 14:00-15:10 | [[lecture_notes:05-24-2010|Slug assemblies and pluck-scripts]]| | ||
+ | | Wed May 26 14:00-15:10 | [[lecture_notes:05-26-2010|pluck-scripts]]| | ||
+ | | Fri May 28 14:00-15:10 | [[lecture_notes:05-28-2010|pluck-scripts cont.]]| | ||
+ | | Wed Jun 02 14:00-15:10 | [[lecture_notes:06-02-2010|Looking at related de-novo assemblies: Sea Hare and Panda]]| | ||
+ | | Fri Jun 04 14:00-15:10 | [[lecture_notes:06-04-2010|Pcap Pog Assembly and Colorspace Python Script]]| |