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The wiki is entirely supported by past and current students from BME235. Please take the extra time to ensure that your posts to the wiki match the [[Style guide | style guide ]]. Additionally take extra care to ensure that your posts are in the right [[https://www.dokuwiki.org/namespaces | name space]] throughout the site. This makes navigation using the sitemap (see the top right of the wiki) much easier, and it will allow the wiki to expand and support future efforts! | The wiki is entirely supported by past and current students from BME235. Please take the extra time to ensure that your posts to the wiki match the [[Style guide | style guide ]]. Additionally take extra care to ensure that your posts are in the right [[https://www.dokuwiki.org/namespaces | name space]] throughout the site. This makes navigation using the sitemap (see the top right of the wiki) much easier, and it will allow the wiki to expand and support future efforts! | ||
* [[Style Guide|Complete guide for modifying the wiki]] | * [[Style Guide|Complete guide for modifying the wiki]] | ||
+ | |||
+ | Important notes about modifying the wiki; | ||
+ | * **Use the 'Preview' button before submitting.** | ||
+ | * **Always provide an edit summary.** | ||
+ | * **For minor changes, click the 'Minor Changes' box** | ||
+ | |||
+ | The wiki stores past revisions of every page. They can be accessed through the side bar using the 'Old revisions' tab. This can be used as a last resort, when a page is altered beyond recognition or accidentally deleted. | ||
==== Computer servers ==== | ==== Computer servers ==== | ||
- | The servers and resources that have been used so far in the project. The most universal resource is UCSC's campusrocks server | + | The servers and resources that have been used so far in the project. The most universal resource is UCSC's [[https://support.soe.ucsc.edu/craigslist | campusrocks server]], which requires a UCSC Cruz Blue ID and password to login. |
* [[computer_resources:campusrocks|Complete guide to campusRocks and SGE]] | * [[computer_resources:campusrocks|Complete guide to campusRocks and SGE]] | ||
+ | During the Spring 2015 [[https://www.soe.ucsc.edu/people/ed | Ed Green ]] was able to let students use his server edser (edser2.ucsc.edu). The server has 390 G of RAM, which is necessary for certain assembly algorithms (Discovar //de novo//). | ||
+ | |||
+ | In both the Spring 2012 and Spring 2015 classes the server Kolossus was accessed. Kolossus is a 1TB RAM machine that the UCSC Genome Browser group uses. Access is restricted, but students interested in using it can contact the [[http://genome.ucsc.edu/staff.html | UCSC Genome Browser system administration staff]]. | ||