READING READS Lib1:
Total inserted pairs = 1449494
READING READS Lib2:
Total inserted pairs = 774725
LIBRARY Lib1 STATS:
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MAPPING READS TO CONTIGS:
Number of single reads found on contigs = 1208432
Number of read-pairs used for pairing contigs / total pairs = 482735 / 495142
READ PAIRS STATS:
Assembled pairs: 482735 (965470 sequences)
Satisfied in distance/logic within contigs (i.e. -> <-, distance on target: 3500 +/-1750): 15831
Unsatisfied in distance within contigs (i.e. distance out-of-bounds): 279966
Unsatisfied pairing logic within contigs (i.e. illogical pairing ->->, <-<- or <-->): 34234
Satisfied in distance/logic within a given contig pair (pre-scaffold): 139853
Unsatisfied in distance within a given contig pair (i.e. calculated distances out-of-bounds): 12851
Total satisfied: 155684 unsatisfied: 327051
Estimated insert size statistics (based on 15831 pairs):
Mean insert size = 2101
Median insert size = 2039
REPEATS:
Number of repeated edges = 8
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LIBRARY Lib2 STATS:
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MAPPING READS TO CONTIGS:
Number of single reads found on contigs = 759686
Number of read-pairs used for pairing contigs / total pairs = 291352 / 322318
READ PAIRS STATS:
Assembled pairs: 291352 (582704 sequences)
Satisfied in distance/logic within contigs (i.e. -> <-, distance on target: 6500 +/-3250): 847
Unsatisfied in distance within contigs (i.e. distance out-of-bounds): 170638
Unsatisfied pairing logic within contigs (i.e. illogical pairing ->->, <-<- or <-->): 17248
Satisfied in distance/logic within a given contig pair (pre-scaffold): 100273
Unsatisfied in distance within a given contig pair (i.e. calculated distances out-of-bounds): 2346
Total satisfied: 101120 unsatisfied: 190232
Estimated insert size statistics (based on 847 pairs):
Mean insert size = 3668
Median insert size = 3458
REPEATS:
Number of repeated edges = 3
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SUMMARY:
Inserted contig file;
Total number of contigs = 1126557
Sum (bp) = 1839371352
Total number of N's = 51400
Sum (bp) no N's = 1839319952
GC Content = 41.11%
Max contig size = 55757
Min contig size = 29
Average contig size = 1632
N25 = 5989
N50 = 3531
N75 = 1944
After scaffolding Lib1:
Total number of scaffolds = 1126514
Sum (bp) = 1839488965
Total number of N's = 169013
Sum (bp) no N's = 1839319952
GC Content = 41.11%
Max scaffold size = 55757
Min scaffold size = 29
Average scaffold size = 1632
N25 = 5990
N50 = 3532
N75 = 1944
After scaffolding Lib2:
Total number of scaffolds = 1126500
Sum (bp) = 1839547327
Total number of N's = 227375
Sum (bp) no N's = 1839319952
GC Content = 41.11%
Max scaffold size = 55757
Min scaffold size = 29
Average scaffold size = 1632
N25 = 5990
N50 = 3532
N75 = 1944