READING READS Lib1: ------------------------------------------------------------ Total inserted pairs = 1449494 ------------------------------------------------------------ READING READS Lib2: ------------------------------------------------------------ Total inserted pairs = 774725 ------------------------------------------------------------ LIBRARY Lib1 STATS: ################################################################################ MAPPING READS TO CONTIGS: ------------------------------------------------------------ Number of single reads found on contigs = 1208432 Number of read-pairs used for pairing contigs / total pairs = 482735 / 495142 ------------------------------------------------------------ READ PAIRS STATS: Assembled pairs: 482735 (965470 sequences) Satisfied in distance/logic within contigs (i.e. -> <-, distance on target: 3500 +/-1750): 15831 Unsatisfied in distance within contigs (i.e. distance out-of-bounds): 279966 Unsatisfied pairing logic within contigs (i.e. illogical pairing ->->, <-<- or <-->): 34234 --- Satisfied in distance/logic within a given contig pair (pre-scaffold): 139853 Unsatisfied in distance within a given contig pair (i.e. calculated distances out-of-bounds): 12851 --- Total satisfied: 155684 unsatisfied: 327051 Estimated insert size statistics (based on 15831 pairs): Mean insert size = 2101 Median insert size = 2039 REPEATS: Number of repeated edges = 8 ------------------------------------------------------------ ################################################################################ LIBRARY Lib2 STATS: ################################################################################ MAPPING READS TO CONTIGS: ------------------------------------------------------------ Number of single reads found on contigs = 759686 Number of read-pairs used for pairing contigs / total pairs = 291352 / 322318 ------------------------------------------------------------ READ PAIRS STATS: Assembled pairs: 291352 (582704 sequences) Satisfied in distance/logic within contigs (i.e. -> <-, distance on target: 6500 +/-3250): 847 Unsatisfied in distance within contigs (i.e. distance out-of-bounds): 170638 Unsatisfied pairing logic within contigs (i.e. illogical pairing ->->, <-<- or <-->): 17248 --- Satisfied in distance/logic within a given contig pair (pre-scaffold): 100273 Unsatisfied in distance within a given contig pair (i.e. calculated distances out-of-bounds): 2346 --- Total satisfied: 101120 unsatisfied: 190232 Estimated insert size statistics (based on 847 pairs): Mean insert size = 3668 Median insert size = 3458 REPEATS: Number of repeated edges = 3 ------------------------------------------------------------ ################################################################################ SUMMARY: ------------------------------------------------------------ Inserted contig file; Total number of contigs = 1126557 Sum (bp) = 1839371352 Total number of N's = 51400 Sum (bp) no N's = 1839319952 GC Content = 41.11% Max contig size = 55757 Min contig size = 29 Average contig size = 1632 N25 = 5989 N50 = 3531 N75 = 1944 After scaffolding Lib1: Total number of scaffolds = 1126514 Sum (bp) = 1839488965 Total number of N's = 169013 Sum (bp) no N's = 1839319952 GC Content = 41.11% Max scaffold size = 55757 Min scaffold size = 29 Average scaffold size = 1632 N25 = 5990 N50 = 3532 N75 = 1944 After scaffolding Lib2: Total number of scaffolds = 1126500 Sum (bp) = 1839547327 Total number of N's = 227375 Sum (bp) no N's = 1839319952 GC Content = 41.11% Max scaffold size = 55757 Min scaffold size = 29 Average scaffold size = 1632 N25 = 5990 N50 = 3532 N75 = 1944 ------------------------------------------------------------