==== Run 2 contig/scaffold statistics ==== === Information for assembly Scaffold 'soapdenovo2_sparseGraph.scafSeq'.(cut_off_length < 100bp) === | Size_includeN | 2385757551 | | Size_withoutN | 1966097910 | | Scaffold_Num | 1702922 | | Mean_Size | 1400 | | Median_Size | 127 | | Longest_Seq | 103808 | | Shortest_Seq | 100 | | Singleton_Num | 1348542 | | Average_length_of_break(N)_in_scaffold | 246 | | Known_genome_size | NaN | | Total_scaffold_length_as_percentage_of_known_genome_size | NaN | | scaffolds>100 | 1669049 | 98.01% | | scaffolds>500 | 381651 | 22.41% | | scaffolds>1K | 316768 | 18.60% | | scaffolds>10K | 67694 | 3.98% | | scaffolds>100K | 2 | 0.00% | | scaffolds>1M | 0 | 0.00% | | Nucleotide_A | 584441943 | 24.50% | | Nucleotide_C | 408838898 | 17.14% | | Nucleotide_G | 401018398 | 16.81% | | Nucleotide_T | 571798671 | 23.97% | | GapContent_N | 419659641 | 17.59% | | Non_ACGTN | 0 | 0.00% | | GC_Content | 41.19% | (G+C)/(A+C+G+T) | | N10 | 25369 | 7250 | | N20 | 18795 | 18322 | | N30 | 14807 | 32691 | | N40 | 11893 | 50718 | | N50 | 9501 | 73185 | | N60 | 7401 | 101632 | | N70 | 5469 | 139040 | | N80 | 3520 | 192876 | | N90 | 1215 | 299499 | | NG50 | NaN | NaN | | N50_scaffold-NG50_scaffold_length_difference | NaN | === Information for assembly Contig 'soapdenovo2_sparseGraph.contig'.(cut_off_length < 100bp) === | Size_includeN | 2051284322 | | Size_withoutN | 2051284322 | | Contig_Num | 3854447 | | Mean_Size | 532 | | Median_Size | 171 | | Longest_Seq | 22512 | | Shortest_Seq | 100 | | Contig>100 | 3819161 | 99.08% | | Contig>500 | 981023 | 25.45% | | Contig>1K | 583666 | 15.14% | | Contig>10K | 891 | 0.02% | | Contig>100K | 0 | 0.00% | | Contig>1M | 0 | 0.00% | | Nucleotide_A | 616184147 | 30.04% | | Nucleotide_C | 432139689 | 21.07% | | Nucleotide_G | 415266192 | 20.24% | | Nucleotide_T | 587694294 | 28.65% | | GapContent_N | 0 | 0.00% | | Non_ACGTN | 0 | 0.00% | | GC_Content | 41.31% | (G+C)/(A+C+G+T) | | N10 | 4397 | 35096 | | N20 | 3142 | 91070 | | N30 | 2400 | 166135 | | N40 | 1860 | 263464 | | N50 | 1425 | 389531 | | N60 | 1048 | 557236 | | N70 | 694 | 796146 | | N80 | 335 | 1214116 | | N90 | 149 | 2184200 | | NG50 | NaN | NaN | | N50_contig-NG50_contig_length_difference | NaN | | Number_of_contigs_in_scaffolds | 2505905 | | Number_of_contigs_not_in_scaffolds(Singleton) | 1348542 | | Average_number_of_contigs_per_scaffold | 7.1 |